Chlorine in PDB 8ckp: X-Ray Structure of the Crystallization-Prone Form of Subfamily III Haloalkane Dehalogenase Dhmea From Haloferax Mediterranei

The structure of X-Ray Structure of the Crystallization-Prone Form of Subfamily III Haloalkane Dehalogenase Dhmea From Haloferax Mediterranei, PDB code: 8ckp was solved by M.Marek, K.Chmelova, A.Schenkmayerova, T.Croll, R.J.Read, K.Diederichs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.47 / 3.31
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	172.76, 289.9, 168.31, 90, 90, 90
R / Rfree (%)	23.6 / 27.5

The binding sites of Chlorine atom in the X-Ray Structure of the Crystallization-Prone Form of Subfamily III Haloalkane Dehalogenase Dhmea From Haloferax Mediterranei (pdb code 8ckp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of the Crystallization-Prone Form of Subfamily III Haloalkane Dehalogenase Dhmea From Haloferax Mediterranei, PDB code: 8ckp:

Chlorine binding site 1 out of 1 in the X-Ray Structure of the Crystallization-Prone Form of Subfamily III Haloalkane Dehalogenase Dhmea From Haloferax Mediterranei


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the Crystallization-Prone Form of Subfamily III Haloalkane Dehalogenase Dhmea From Haloferax Mediterranei within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl1001 b:138.2 occ:1.00 NH2 F:ARG265 3.4 163.4 1.0 NH1 F:ARG278 3.4 163.5 1.0 O D:PRO158 3.5 136.7 1.0 N D:ASP161 3.7 128.2 1.0 NH2 F:ARG278 3.8 166.4 1.0 C D:PRO158 3.8 140.7 1.0 N D:SER160 3.8 146.1 1.0 CA D:VAL159 4.0 138.2 1.0 C D:VAL159 4.0 148.0 1.0 N D:VAL159 4.0 130.6 1.0 CB D:ASP161 4.0 136.9 1.0 OD2 D:ASP161 4.0 147.3 1.0 CZ F:ARG278 4.1 160.4 1.0 CB D:PRO158 4.2 142.1 1.0 CZ F:ARG265 4.3 154.5 1.0 CG D:ASP161 4.3 146.7 1.0 CA D:ASP161 4.4 142.0 1.0 NE F:ARG265 4.4 138.4 1.0 CA D:PRO158 4.6 146.9 1.0 C D:SER160 4.6 130.1 1.0 CA D:SER160 4.7 131.3 1.0 O D:VAL159 4.7 142.7 1.0 N D:ASP162 4.8 153.6 1.0 CB F:PRO261 4.8 147.2 1.0 C D:ASP161 4.9 147.3 1.0

K.Chmelova, T.Gao, M.Polak, A.Schenkmayerova, T.I.Croll, T.R.Shaikh, J.Skarupova, R.Chaloupkova, K.Diederichs, R.J.Read, J.Damborsky, J.Novacek, M.Marek. Multimeric Structure of A Subfamily III Haloalkane Dehalogenase-Like Enzyme Solved By Combination of Cryo-Em and X-Ray Crystallography. Protein Sci. E4751 2023.
ISSN: ESSN 1469-896X
PubMed: 37574754
DOI: 10.1002/PRO.4751