Chlorine in PDB 8ctm: Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani.

Enzymatic activity of Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani.

All present enzymatic activity of Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani.:
3.2.2.1;

Protein crystallography data

The structure of Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani., PDB code: 8ctm was solved by Y.Chen, W.D.Tolbert, M.Pazgier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.87 / 1.73
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.221, 79.111, 107.621, 90, 90.77, 90
R / Rfree (%) 17.4 / 20.7

Other elements in 8ctm:

The structure of Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani. also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani. (pdb code 8ctm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani., PDB code: 8ctm:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8ctm

Go back to Chlorine Binding Sites List in 8ctm
Chlorine binding site 1 out of 2 in the Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:56.5
occ:1.00
OE2 B:GLU257 3.3 56.2 1.0
CD B:GLU257 4.0 46.7 1.0
OE1 B:GLU257 4.1 46.1 1.0
OH B:TYR156 4.2 27.4 1.0
CE1 B:PHE278 4.4 23.9 1.0
CE1 B:TYR156 4.5 19.7 1.0
CG1 B:VAL292 4.6 22.8 1.0
CZ B:TYR156 4.6 32.6 1.0
CZ B:PHE278 4.7 16.9 1.0
CD1 B:PHE278 4.7 31.7 1.0
CG2 B:VAL292 4.8 19.1 1.0

Chlorine binding site 2 out of 2 in 8ctm

Go back to Chlorine Binding Sites List in 8ctm
Chlorine binding site 2 out of 2 in the Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:65.4
occ:1.00
O B:HOH541 3.0 20.3 1.0
CE B:LYS147 3.6 55.9 1.0
O B:HOH542 3.7 21.3 1.0
CG B:ARG3 3.8 32.4 1.0
CD B:LYS147 4.0 24.9 1.0
O B:THR120 4.2 21.8 1.0
NZ B:LYS147 4.3 68.2 1.0
CA B:ARG3 4.4 17.9 1.0
CB B:ARG3 4.5 21.5 1.0
CA B:THR120 4.5 22.0 1.0
O B:LYS119 4.5 24.6 1.0
C B:THR120 4.6 25.6 1.0
O B:HOH653 4.7 47.8 1.0
O B:PRO2 4.9 35.7 1.0
CD B:ARG3 4.9 39.8 1.0

Reference:

Y.Chen, W.D.Tolbert, M.Pazgier. Crystal Structure of the Nucleoside Hydrolase From Leishmania Donovani. To Be Published.
Page generated: Tue Jul 30 08:09:13 2024

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