Chlorine in PDB 8d3s: Hiv-1 Integrase Catalytic Core Domain F185H Mutant Complexed with Bkc- 110

Protein crystallography data

The structure of Hiv-1 Integrase Catalytic Core Domain F185H Mutant Complexed with Bkc- 110, PDB code: 8d3s was solved by T.Dinh, M.Kvaratskhelia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.56 / 1.84
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.514, 72.514, 66.205, 90, 90, 120
R / Rfree (%) 24.4 / 27.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hiv-1 Integrase Catalytic Core Domain F185H Mutant Complexed with Bkc- 110 (pdb code 8d3s). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Hiv-1 Integrase Catalytic Core Domain F185H Mutant Complexed with Bkc- 110, PDB code: 8d3s:

Chlorine binding site 1 out of 1 in 8d3s

Go back to Chlorine Binding Sites List in 8d3s
Chlorine binding site 1 out of 1 in the Hiv-1 Integrase Catalytic Core Domain F185H Mutant Complexed with Bkc- 110


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hiv-1 Integrase Catalytic Core Domain F185H Mutant Complexed with Bkc- 110 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:33.4
occ:1.00
CL32 A:QD6301 0.0 33.4 1.0
C31 A:QD6301 1.8 22.2 1.0
C33 A:QD6301 2.8 20.6 1.0
C30 A:QD6301 2.8 24.4 1.0
H331 A:QD6301 2.9 25.2 1.0
H301 A:QD6301 3.0 29.7 1.0
HE3 A:MET178 3.5 44.0 1.0
HG2 A:MET178 3.8 35.8 1.0
C34 A:QD6301 4.1 25.5 1.0
C29 A:QD6301 4.1 29.1 1.0
SD A:MET178 4.1 34.1 1.0
HG3 A:MET178 4.1 35.8 1.0
CE A:MET178 4.2 36.3 1.0
CG A:MET178 4.2 29.4 1.0
HE1 A:MET178 4.6 44.0 1.0
C28 A:QD6301 4.6 23.8 1.0
HG23 A:THR174 4.8 33.9 1.0
O A:HOH478 4.9 30.0 1.0
HG22 A:THR174 4.9 33.9 1.0
HG21 A:THR174 4.9 33.9 1.0
HE2 A:MET178 4.9 44.0 1.0
H341 A:QD6301 5.0 31.1 1.0

Reference:

T.Dinh, M.Kvaratskhelia. Hiv-1 Integrase Catalytic Core Domain Complexed with Bkc-110 To Be Published.
Page generated: Wed Jul 26 16:01:35 2023

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