Chlorine in PDB 8ddy: Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp.

The binding sites of Chlorine atom in the Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp. (pdb code 8ddy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp., PDB code: 8ddy:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp. within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl202 b:17.3 occ:1.00 NE B:ARG83 2.9 15.6 1.0 O B:HOH323 3.0 13.8 1.0 CG B:ARG83 3.4 15.6 1.0 CD B:ARG83 3.7 15.6 1.0 O B:HOH368 3.7 21.6 1.0 NH2 B:ARG83 3.7 15.6 1.0 CZ B:ARG83 3.7 15.6 1.0 CA B:ALA80 3.8 13.8 1.0 N B:ALA80 4.1 13.8 1.0 O B:ALA79 4.2 14.3 1.0 CB B:ALA80 4.2 13.8 1.0 C B:ALA79 4.3 14.3 1.0 O C:HOH308 4.5 16.9 1.0 CB B:ARG83 4.7 15.6 1.0 CB B:ALA79 5.0 14.3 1.0 NH1 B:ARG83 5.0 15.6 1.0

Chlorine binding site 2 out of 3 in the Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp. within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl202 b:15.1 occ:1.00 O D:HOH318 3.0 10.2 1.0 NE D:ARG83 3.0 12.5 1.0 CG D:ARG83 3.4 12.5 1.0 O D:HOH370 3.6 16.8 1.0 CD D:ARG83 3.8 12.5 1.0 CA D:ALA80 3.8 11.1 1.0 CZ D:ARG83 3.9 12.5 1.0 NH2 D:ARG83 3.9 12.5 1.0 N D:ALA80 4.1 11.1 1.0 O D:ALA79 4.2 11.1 1.0 C D:ALA79 4.2 11.1 1.0 O E:HOH312 4.3 12.9 1.0 CB D:ALA80 4.3 11.1 1.0 CB D:ARG83 4.7 12.5 1.0 CB D:ALA79 4.8 11.1 1.0

Chlorine binding site 3 out of 3 in the Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Helical Rods of Far-Red Light-Absorbing Allophycocyanin in Synechococcus Sp. within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl202 b:18.7 occ:1.00 O F:HOH320 3.0 14.3 1.0 NE F:ARG83 3.0 16.8 1.0 CG F:ARG83 3.5 16.8 1.0 O F:HOH375 3.6 16.5 1.0 CA F:ALA80 3.7 14.7 1.0 CD F:ARG83 3.8 16.8 1.0 NH2 F:ARG83 3.9 16.8 1.0 CZ F:ARG83 3.9 16.8 1.0 N F:ALA80 4.0 14.7 1.0 O F:HOH384 4.1 14.4 1.0 O F:ALA79 4.1 14.5 1.0 C F:ALA79 4.2 14.5 1.0 CB F:ALA80 4.2 14.7 1.0 CB F:ARG83 4.7 16.8 1.0 CB F:ALA79 4.8 14.5 1.0 C F:ALA80 5.0 14.7 1.0

C.J.Gisriel, E.Elias, G.Shen, N.T.Soulier, D.A.Flesher, M.R.Gunner, G.W.Brudvig, R.Croce, D.A.Bryant. Helical Allophycocyanin Nanotubes Absorb Far-Red Light in A Thermophilic Cyanobacterium. Sci Adv V. 9 G0251 2023.
ISSN: ESSN 2375-2548
PubMed: 36961897
DOI: 10.1126/SCIADV.ADG0251