Chlorine in PDB 8dla: CLPP2 From Chlamydia Trachomatis Bound By MAS1-12

Enzymatic activity of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12

All present enzymatic activity of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12:
3.4.21.92;

Protein crystallography data

The structure of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12, PDB code: 8dla was solved by J.Azadmanesh, L.R.Struble, M.A.Seleem, S.Ouellette, M.Conda-Sheridan, G.E.O.Borgstahl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.09 / 2.66
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 97, 98.01, 97.97, 97.16, 114.15, 114.16
R / Rfree (%) 17.4 / 21

Other elements in 8dla:

The structure of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12 also contains other interesting chemical elements:

Fluorine (F) 18 atoms
Sodium (Na) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the CLPP2 From Chlamydia Trachomatis Bound By MAS1-12 (pdb code 8dla). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the CLPP2 From Chlamydia Trachomatis Bound By MAS1-12, PDB code: 8dla:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 8dla

Go back to Chlorine Binding Sites List in 8dla
Chlorine binding site 1 out of 6 in the CLPP2 From Chlamydia Trachomatis Bound By MAS1-12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:135.2
occ:1.00
 CL01 A:UER301 0.0 135.2 1.0
C18 A:UER301 1.8 123.3 1.0
C19 A:UER301 2.8 122.8 1.0
C17 A:UER301 2.8 123.7 1.0
O A:HOH431 2.8 47.5 1.0
C20 A:UER301 4.0 126.9 1.0
C16 A:UER301 4.1 127.1 1.0
C15 A:UER301 4.6 130.1 1.0

Chlorine binding site 2 out of 6 in 8dla

Go back to Chlorine Binding Sites List in 8dla
Chlorine binding site 2 out of 6 in the CLPP2 From Chlamydia Trachomatis Bound By MAS1-12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:65.4
occ:1.00
 CL01 A:UER302 0.0 65.4 1.0
C18 A:UER302 1.8 77.2 1.0
C19 A:UER302 2.7 76.3 1.0
C17 A:UER302 2.8 80.2 1.0
CD C:ARG28 3.5 45.2 1.0
CG C:ARG28 3.5 47.0 1.0
O C:LYS26 3.9 66.6 1.0
C20 A:UER302 4.0 81.1 1.0
C16 A:UER302 4.1 80.1 1.0
OE2 C:GLU54 4.4 56.2 1.0
C C:ASP27 4.4 57.4 1.0
CA C:ASP27 4.5 58.7 1.0
CB C:ARG28 4.5 47.6 1.0
C15 A:UER302 4.6 85.9 1.0
O C:ASP27 4.6 57.4 1.0
CD C:LYS58 4.6 41.6 1.0
N C:ARG28 4.7 52.4 1.0
NE C:ARG28 4.9 44.6 1.0
C C:LYS26 4.9 58.0 1.0

Chlorine binding site 3 out of 6 in 8dla

Go back to Chlorine Binding Sites List in 8dla
Chlorine binding site 3 out of 6 in the CLPP2 From Chlamydia Trachomatis Bound By MAS1-12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:103.0
occ:1.00
 CL01 B:UER301 0.0 103.0 1.0
C18 B:UER301 1.8 95.3 1.0
C17 B:UER301 2.8 97.7 1.0
C19 B:UER301 2.8 94.5 1.0
C16 B:UER301 4.0 97.3 1.0
C20 B:UER301 4.0 95.4 1.0
C15 B:UER301 4.6 97.3 1.0

Chlorine binding site 4 out of 6 in 8dla

Go back to Chlorine Binding Sites List in 8dla
Chlorine binding site 4 out of 6 in the CLPP2 From Chlamydia Trachomatis Bound By MAS1-12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl301

b:83.1
occ:1.00
 CL01 D:UER301 0.0 83.1 1.0
C18 D:UER301 1.8 88.5 1.0
C19 D:UER301 2.8 79.1 1.0
C17 D:UER301 2.8 90.9 1.0
OD1 D:ASP27 3.5 51.7 1.0
C20 D:UER301 4.0 73.7 1.0
C16 D:UER301 4.1 91.2 1.0
O D:LYS26 4.4 42.9 1.0
CG D:ASP27 4.6 50.0 1.0
C15 D:UER301 4.6 84.1 1.0
CA D:ASP27 5.0 38.2 1.0

Chlorine binding site 5 out of 6 in 8dla

Go back to Chlorine Binding Sites List in 8dla
Chlorine binding site 5 out of 6 in the CLPP2 From Chlamydia Trachomatis Bound By MAS1-12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl302

b:80.4
occ:1.00
 CL01 G:UER302 0.0 80.4 1.0
C18 G:UER302 1.8 99.2 1.0
C17 G:UER302 2.8 96.0 1.0
C19 G:UER302 2.8 96.1 1.0
CE G:LYS111 3.8 34.9 1.0
C16 G:UER302 4.0 99.0 1.0
C20 G:UER302 4.0 100.5 1.0
NZ G:LYS111 4.1 40.2 1.0
OH G:TYR113 4.2 35.6 1.0
C15 G:UER302 4.6 102.4 1.0
CD G:LYS111 4.7 42.1 1.0
CG G:LYS111 4.7 36.7 1.0

Chlorine binding site 6 out of 6 in 8dla

Go back to Chlorine Binding Sites List in 8dla
Chlorine binding site 6 out of 6 in the CLPP2 From Chlamydia Trachomatis Bound By MAS1-12


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of CLPP2 From Chlamydia Trachomatis Bound By MAS1-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Cl301

b:111.5
occ:1.00
 CL01 M:UER301 0.0 111.5 1.0
C18 M:UER301 1.8 113.1 1.0
C19 M:UER301 2.8 108.7 1.0
C17 M:UER301 2.8 108.5 1.0
C20 M:UER301 4.0 106.0 1.0
C16 M:UER301 4.1 106.9 1.0
C15 M:UER301 4.6 106.7 1.0

Reference:

J.Azadmanesh, L.R.Struble, G.E.O.Borgstahl, S.Ouellette, M.Conda Sheridan. CLPP2 From Chlamydia Trachomatis with Resolved Handle Loop To Be Published.
Page generated: Tue Jul 30 08:48:39 2024

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