Chlorine in PDB 8du1: Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis

Enzymatic activity of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis

All present enzymatic activity of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis:
4.2.1.46;

Protein crystallography data

The structure of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis, PDB code: 8du1 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.80 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 66.74, 84.62, 130.87, 90, 101.18, 90
R / Rfree (%) 15.6 / 19.5

Other elements in 8du1:

The structure of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis (pdb code 8du1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis, PDB code: 8du1:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8du1

Go back to Chlorine Binding Sites List in 8du1
Chlorine binding site 1 out of 4 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:38.4
occ:1.00
 O A:HOH729 3.2 37.1 1.0
N A:TYR224 3.3 35.6 1.0
ND2 A:ASN266 3.3 28.3 1.0
CB A:ASN266 3.6 23.0 1.0
CD1 A:TYR224 3.9 42.7 1.0
CA A:GLY227 3.9 32.8 1.0
CG A:ASN266 4.0 29.9 1.0
CB A:TYR224 4.0 37.6 1.0
CA A:ILE223 4.0 35.2 1.0
O A:TYR224 4.0 37.4 1.0
CA A:TYR224 4.1 38.2 1.0
C A:ILE223 4.1 35.3 1.0
CG2 A:ILE223 4.2 36.5 1.0
CD1 A:ILE223 4.4 32.6 1.0
CG A:TYR224 4.4 46.9 1.0
O A:HOH877 4.5 46.6 1.0
C A:TYR224 4.5 37.4 1.0
CB A:ILE223 4.7 36.1 1.0
O A:PRO222 4.7 32.5 1.0
C A:GLY227 4.7 33.8 1.0
N A:GLY227 4.7 34.5 1.0
O A:HOH715 4.9 34.6 1.0
CB A:TYR229 4.9 34.2 1.0
CE1 A:TYR224 4.9 50.4 1.0
O A:GLY227 5.0 26.3 1.0

Chlorine binding site 2 out of 4 in 8du1

Go back to Chlorine Binding Sites List in 8du1
Chlorine binding site 2 out of 4 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:37.3
occ:1.00
 N B:TYR224 3.2 38.0 1.0
O B:HOH743 3.3 44.7 1.0
O B:HOH737 3.4 33.8 1.0
ND2 B:ASN266 3.4 34.2 1.0
CB B:ASN266 3.8 23.9 1.0
CD1 B:TYR224 3.8 46.2 1.0
CB B:TYR224 3.9 44.5 1.0
CA B:ILE223 4.0 33.4 1.0
CA B:TYR224 4.1 36.9 1.0
C B:ILE223 4.1 34.6 1.0
CA B:GLY227 4.1 33.1 1.0
O B:TYR224 4.1 41.9 1.0
CG B:ASN266 4.1 27.9 1.0
CD1 B:ILE223 4.2 29.8 1.0
CG2 B:ILE223 4.3 36.0 1.0
CG B:TYR224 4.4 42.7 1.0
C B:TYR224 4.6 40.0 1.0
CB B:ILE223 4.6 38.9 1.0
O B:PRO222 4.7 36.1 1.0
C B:GLY227 4.8 32.1 1.0
CE1 B:TYR224 4.8 52.0 1.0
N B:GLY227 4.9 38.1 1.0
CB B:TYR229 4.9 29.7 1.0

Chlorine binding site 3 out of 4 in 8du1

Go back to Chlorine Binding Sites List in 8du1
Chlorine binding site 3 out of 4 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl406

b:51.4
occ:1.00
 O C:HOH631 3.1 56.1 1.0
NE2 C:HIS301 3.2 86.8 1.0
N C:TYR224 3.2 59.2 1.0
ND2 C:ASN266 3.5 42.6 1.0
CA C:GLY227 3.7 47.6 1.0
CB C:ASN266 3.7 38.9 1.0
CD2 C:TYR224 3.8 69.6 1.0
O C:TYR224 3.8 61.9 1.0
CD2 C:HIS301 3.9 85.1 1.0
CB C:TYR224 4.0 66.6 1.0
CA C:TYR224 4.0 63.8 1.0
CA C:ILE223 4.1 51.9 1.0
C C:ILE223 4.1 59.8 1.0
CG C:ASN266 4.1 41.4 1.0
CE1 C:HIS301 4.2 87.4 1.0
CG2 C:ILE223 4.2 50.7 1.0
C C:TYR224 4.4 62.3 1.0
CG C:TYR224 4.4 72.2 1.0
N C:GLY227 4.4 49.3 1.0
C C:GLY227 4.5 47.3 1.0
CD1 C:ILE223 4.5 49.6 1.0
CB C:ILE223 4.7 55.3 1.0
O C:GLY227 4.8 40.7 1.0
CE2 C:TYR224 4.8 69.9 1.0
O C:PRO222 4.8 51.4 1.0

Chlorine binding site 4 out of 4 in 8du1

Go back to Chlorine Binding Sites List in 8du1
Chlorine binding site 4 out of 4 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl406

b:64.4
occ:1.00
 N D:TYR224 3.1 55.4 1.0
CB D:ASN266 3.6 56.3 1.0
ND2 D:ASN266 3.7 61.2 1.0
O D:TYR224 3.7 62.2 1.0
CA D:GLY227 3.8 65.3 1.0
CB D:TYR224 3.9 63.2 1.0
CA D:TYR224 3.9 60.9 1.0
C D:ILE223 4.0 58.7 1.0
CA D:ILE223 4.0 56.3 1.0
CG2 D:ILE223 4.1 57.7 1.0
CG D:ASN266 4.2 54.5 1.0
CD1 D:TYR224 4.2 63.5 1.0
C D:TYR224 4.3 60.8 1.0
N D:GLY227 4.5 61.3 1.0
CG D:TYR224 4.6 64.5 1.0
CD1 D:ILE223 4.6 51.9 1.0
C D:GLY227 4.6 70.5 1.0
CB D:ILE223 4.6 58.8 1.0
O D:PRO222 4.8 52.0 1.0
CB D:TYR229 4.9 65.4 1.0
O D:GLY227 4.9 65.8 1.0
CA D:ASN266 5.0 48.6 1.0

Reference:

N.D.Debouver, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis To Be Published.
Page generated: Tue Apr 4 22:47:25 2023

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