Chlorine in PDB 8du1: Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis

Enzymatic activity of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis

All present enzymatic activity of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis:
4.2.1.46;

Protein crystallography data

The structure of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis, PDB code: 8du1 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.80 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 66.74, 84.62, 130.87, 90, 101.18, 90
R / Rfree (%) 15.6 / 19.5

Other elements in 8du1:

The structure of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis (pdb code 8du1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis, PDB code: 8du1:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8du1

Go back to Chlorine Binding Sites List in 8du1
Chlorine binding site 1 out of 4 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:38.4
occ:1.00
 O A:HOH729 3.2 37.1 1.0
N A:TYR224 3.3 35.6 1.0
ND2 A:ASN266 3.3 28.3 1.0
CB A:ASN266 3.6 23.0 1.0
CD1 A:TYR224 3.9 42.7 1.0
CA A:GLY227 3.9 32.8 1.0
CG A:ASN266 4.0 29.9 1.0
CB A:TYR224 4.0 37.6 1.0
CA A:ILE223 4.0 35.2 1.0
O A:TYR224 4.0 37.4 1.0
CA A:TYR224 4.1 38.2 1.0
C A:ILE223 4.1 35.3 1.0
CG2 A:ILE223 4.2 36.5 1.0
CD1 A:ILE223 4.4 32.6 1.0
CG A:TYR224 4.4 46.9 1.0
O A:HOH877 4.5 46.6 1.0
C A:TYR224 4.5 37.4 1.0
CB A:ILE223 4.7 36.1 1.0
O A:PRO222 4.7 32.5 1.0
C A:GLY227 4.7 33.8 1.0
N A:GLY227 4.7 34.5 1.0
O A:HOH715 4.9 34.6 1.0
CB A:TYR229 4.9 34.2 1.0
CE1 A:TYR224 4.9 50.4 1.0
O A:GLY227 5.0 26.3 1.0

Chlorine binding site 2 out of 4 in 8du1

Go back to Chlorine Binding Sites List in 8du1
Chlorine binding site 2 out of 4 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl405

b:37.3
occ:1.00
 N B:TYR224 3.2 38.0 1.0
O B:HOH743 3.3 44.7 1.0
O B:HOH737 3.4 33.8 1.0
ND2 B:ASN266 3.4 34.2 1.0
CB B:ASN266 3.8 23.9 1.0
CD1 B:TYR224 3.8 46.2 1.0
CB B:TYR224 3.9 44.5 1.0
CA B:ILE223 4.0 33.4 1.0
CA B:TYR224 4.1 36.9 1.0
C B:ILE223 4.1 34.6 1.0
CA B:GLY227 4.1 33.1 1.0
O B:TYR224 4.1 41.9 1.0
CG B:ASN266 4.1 27.9 1.0
CD1 B:ILE223 4.2 29.8 1.0
CG2 B:ILE223 4.3 36.0 1.0
CG B:TYR224 4.4 42.7 1.0
C B:TYR224 4.6 40.0 1.0
CB B:ILE223 4.6 38.9 1.0
O B:PRO222 4.7 36.1 1.0
C B:GLY227 4.8 32.1 1.0
CE1 B:TYR224 4.8 52.0 1.0
N B:GLY227 4.9 38.1 1.0
CB B:TYR229 4.9 29.7 1.0

Chlorine binding site 3 out of 4 in 8du1

Go back to Chlorine Binding Sites List in 8du1
Chlorine binding site 3 out of 4 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl406

b:51.4
occ:1.00
 O C:HOH631 3.1 56.1 1.0
NE2 C:HIS301 3.2 86.8 1.0
N C:TYR224 3.2 59.2 1.0
ND2 C:ASN266 3.5 42.6 1.0
CA C:GLY227 3.7 47.6 1.0
CB C:ASN266 3.7 38.9 1.0
CD2 C:TYR224 3.8 69.6 1.0
O C:TYR224 3.8 61.9 1.0
CD2 C:HIS301 3.9 85.1 1.0
CB C:TYR224 4.0 66.6 1.0
CA C:TYR224 4.0 63.8 1.0
CA C:ILE223 4.1 51.9 1.0
C C:ILE223 4.1 59.8 1.0
CG C:ASN266 4.1 41.4 1.0
CE1 C:HIS301 4.2 87.4 1.0
CG2 C:ILE223 4.2 50.7 1.0
C C:TYR224 4.4 62.3 1.0
CG C:TYR224 4.4 72.2 1.0
N C:GLY227 4.4 49.3 1.0
C C:GLY227 4.5 47.3 1.0
CD1 C:ILE223 4.5 49.6 1.0
CB C:ILE223 4.7 55.3 1.0
O C:GLY227 4.8 40.7 1.0
CE2 C:TYR224 4.8 69.9 1.0
O C:PRO222 4.8 51.4 1.0

Chlorine binding site 4 out of 4 in 8du1

Go back to Chlorine Binding Sites List in 8du1
Chlorine binding site 4 out of 4 in the Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Nad Bound Dtdp-Glucose 4,6-Dehydratase From Elizabethkingia Anophelis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl406

b:64.4
occ:1.00
 N D:TYR224 3.1 55.4 1.0
CB D:ASN266 3.6 56.3 1.0
ND2 D:ASN266 3.7 61.2 1.0
O D:TYR224 3.7 62.2 1.0
CA D:GLY227 3.8 65.3 1.0
CB D:TYR224 3.9 63.2 1.0
CA D:TYR224 3.9 60.9 1.0
C D:ILE223 4.0 58.7 1.0
CA D:ILE223 4.0 56.3 1.0
CG2 D:ILE223 4.1 57.7 1.0
CG D:ASN266 4.2 54.5 1.0
CD1 D:TYR224 4.2 63.5 1.0
C D:TYR224 4.3 60.8 1.0
N D:GLY227 4.5 61.3 1.0
CG D:TYR224 4.6 64.5 1.0
CD1 D:ILE223 4.6 51.9 1.0
C D:GLY227 4.6 70.5 1.0
CB D:ILE223 4.6 58.8 1.0
O D:PRO222 4.8 52.0 1.0
CB D:TYR229 4.9 65.4 1.0
O D:GLY227 4.9 65.8 1.0
CA D:ASN266 5.0 48.6 1.0

Reference:

N.D.Debouver, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis To Be Published.
Page generated: Tue Jul 30 08:52:51 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy