Chlorine in PDB 8dz7: Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset

Enzymatic activity of Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset

All present enzymatic activity of Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset:
3.2.1.17;

Protein crystallography data

The structure of Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset, PDB code: 8dz7 was solved by S.P.Meisburger, S.M.S.Imran, N.Ando, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.82 / 1.34
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.486, 56.401, 73.852, 90, 90, 90
R / Rfree (%) 11.8 / 13.6

Other elements in 8dz7:

The structure of Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset (pdb code 8dz7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset, PDB code: 8dz7:

Chlorine binding site 1 out of 1 in 8dz7

Go back to Chlorine Binding Sites List in 8dz7
Chlorine binding site 1 out of 1 in the Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:22.0
occ:1.00
 H A:SER81 2.6 14.8 1.0
HA A:ASP66 2.7 19.0 1.0
HB3 A:SER81 2.9 19.9 1.0
N A:SER81 3.3 15.4 1.0
H A:CYS80 3.3 14.1 1.0
HB2 A:CYS80 3.3 14.7 1.0
O A:ASN65 3.6 17.9 1.0
CA A:ASP66 3.6 19.2 1.0
CB A:SER81 3.7 19.9 1.0
N A:CYS80 3.7 14.1 1.0
HB2 A:ASP66 3.8 18.0 1.0
HB2 A:PRO79 3.9 18.3 1.0
HB3 A:PRO79 4.0 19.1 1.0
CA A:SER81 4.0 16.4 1.0
C A:CYS80 4.1 13.7 1.0
CB A:ASP66 4.1 18.1 1.0
HB3 A:ASP66 4.1 18.1 1.0
OG A:SER81 4.1 24.4 1.0
CB A:CYS80 4.1 14.8 1.0
CA A:CYS80 4.1 14.0 1.0
HG A:SER81 4.3 24.2 0.0
HA A:SER81 4.3 16.8 1.0
O A:ASP66 4.3 25.5 1.0
C A:ASP66 4.3 20.6 1.0
CB A:PRO79 4.3 19.0 1.0
C A:PRO79 4.4 14.1 1.0
HB2 A:SER81 4.4 19.9 1.0
HA A:PRO79 4.4 15.8 1.0
C A:ASN65 4.5 16.8 1.0
N A:ASP66 4.5 18.1 1.0
CA A:PRO79 4.6 15.5 1.0
HB3 A:CYS80 4.8 14.9 1.0

Reference:

S.P.Meisburger, D.A.Case, N.Ando. Robust Total X-Ray Scattering Workflow to Study Correlated Motion of Proteins in Crystals Biorxiv 2022.
DOI: 10.1101/2022.08.22.504832
Page generated: Tue Jul 30 08:55:15 2024

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