Chlorine in PDB 8ecy: Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex

Enzymatic activity of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex

All present enzymatic activity of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex:
2.3.1.225; 6.3.1.2;

Other elements in 8ecy:

The structure of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex also contains other interesting chemical elements:

Calcium (Ca) 5 atoms
Manganese (Mn) 20 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex (pdb code 8ecy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex, PDB code: 8ecy:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 8ecy

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Chlorine binding site 1 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl502

b:6.0
occ:1.00
 NZ E:LYS208 3.3 36.1 1.0
NZ C:LYS208 3.3 36.1 1.0
NZ N:LYS208 3.3 36.1 1.0
NZ G:LYS208 3.3 36.1 1.0
NZ K:LYS208 3.3 36.1 1.0
CE E:LYS208 4.3 36.8 1.0
CE C:LYS208 4.3 36.8 1.0
CE N:LYS208 4.3 36.8 1.0
CE G:LYS208 4.3 36.8 1.0
CE K:LYS208 4.3 36.8 1.0
CD E:LYS208 4.6 34.1 1.0
CD C:LYS208 4.6 34.1 1.0
CD N:LYS208 4.6 34.1 1.0
CD G:LYS208 4.6 34.1 1.0
CD K:LYS208 4.6 34.1 1.0
OE2 C:GLU212 4.8 50.0 1.0
OE2 E:GLU212 4.8 50.0 1.0
OE2 G:GLU212 4.8 50.0 1.0
OE2 N:GLU212 4.8 50.0 1.0
OE2 K:GLU212 4.8 50.0 1.0

Chlorine binding site 2 out of 11 in 8ecy

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Chlorine binding site 2 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:12.4
occ:1.00
 OG1 A:THR44 2.9 21.6 1.0
O J:HOH512 3.0 50.0 1.0
O A:HOH573 3.3 50.0 1.0
CE A:MET29 3.5 32.6 1.0
N A:THR44 3.5 18.9 1.0
OG1 J:THR193 3.6 34.9 1.0
CA A:LYS43 3.7 21.2 1.0
CB A:THR44 3.8 24.1 1.0
O J:THR193 3.8 24.2 1.0
C A:LYS43 3.8 20.1 1.0
NH1 J:ARG173 4.1 26.4 1.0
NH2 A:ARG90 4.2 35.5 1.0
CA A:THR44 4.3 20.7 1.0
C J:THR193 4.3 24.1 1.0
N A:LYS43 4.5 19.9 1.0
O J:HOH530 4.6 12.2 1.0
CA J:ASN194 4.6 25.2 1.0
CB A:LYS43 4.6 22.9 1.0
CB J:THR193 4.7 34.9 1.0
O A:LYS43 4.7 21.2 1.0
O A:CYS42 4.7 18.1 1.0
N J:ASN194 4.8 22.7 1.0
O J:HOH567 4.8 19.3 1.0
C A:CYS42 4.8 17.4 1.0
SG A:CYS42 4.9 28.2 1.0
OE2 J:GLU177 4.9 52.5 1.0

Chlorine binding site 3 out of 11 in 8ecy

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Chlorine binding site 3 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl403

b:17.7
occ:1.00
 OG1 J:THR44 2.9 21.6 1.0
O L:HOH508 3.0 50.0 1.0
O J:HOH569 3.3 50.0 1.0
N J:THR44 3.5 18.9 1.0
OG1 L:THR193 3.5 34.9 1.0
CE J:MET29 3.6 32.6 1.0
O L:THR193 3.6 24.2 1.0
CA J:LYS43 3.6 21.2 1.0
CB J:THR44 3.7 24.1 1.0
C J:LYS43 3.8 20.1 1.0
C L:THR193 4.2 24.1 1.0
NH1 L:ARG173 4.2 26.4 1.0
CA J:THR44 4.2 20.7 1.0
NH2 J:ARG90 4.2 35.5 1.0
CA L:ASN194 4.4 25.2 1.0
N J:LYS43 4.5 19.9 1.0
CB J:LYS43 4.6 22.9 1.0
CB L:THR193 4.6 34.9 1.0
O L:HOH534 4.6 11.4 1.0
N L:ASN194 4.6 22.7 1.0
O L:HOH588 4.7 24.2 1.0
O J:LYS43 4.7 21.2 1.0
O J:CYS42 4.7 18.1 1.0
C J:CYS42 4.9 17.4 1.0
CA L:THR193 4.9 24.0 1.0
SG J:CYS42 5.0 28.2 1.0

Chlorine binding site 4 out of 11 in 8ecy

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Chlorine binding site 4 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl403

b:17.3
occ:1.00
 OG1 L:THR44 2.9 21.6 1.0
O H:HOH508 2.9 50.0 1.0
CE L:MET29 3.4 32.6 1.0
O L:HOH567 3.4 50.0 1.0
N L:THR44 3.6 18.9 1.0
OG1 H:THR193 3.7 34.9 1.0
CA L:LYS43 3.7 21.2 1.0
CB L:THR44 3.7 24.1 1.0
O H:THR193 3.9 24.2 1.0
C L:LYS43 3.9 20.1 1.0
NH1 H:ARG173 4.1 26.4 1.0
NH2 L:ARG90 4.1 35.5 1.0
CA L:THR44 4.3 20.7 1.0
C H:THR193 4.4 24.1 1.0
N L:LYS43 4.6 19.9 1.0
O H:HOH512 4.6 12.1 1.0
CA H:ASN194 4.7 25.2 1.0
CB L:LYS43 4.7 22.9 1.0
O L:LYS43 4.7 21.2 1.0
CB H:THR193 4.7 34.9 1.0
O L:CYS42 4.8 18.1 1.0
N H:ASN194 4.8 22.7 1.0
SG L:CYS42 4.8 28.2 1.0
OE2 H:GLU177 4.9 52.5 1.0
C L:CYS42 4.9 17.4 1.0
CG L:MET29 4.9 31.6 1.0
SD L:MET29 5.0 35.4 1.0

Chlorine binding site 5 out of 11 in 8ecy

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Chlorine binding site 5 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cl403

b:11.4
occ:1.00
 OG1 Q:THR44 2.9 21.6 1.0
O B:HOH509 3.0 50.0 1.0
O Q:HOH561 3.3 50.0 1.0
N Q:THR44 3.5 18.9 1.0
OG1 B:THR193 3.5 34.9 1.0
CE Q:MET29 3.6 32.6 1.0
O B:THR193 3.6 24.2 1.0
CA Q:LYS43 3.6 21.2 1.0
CB Q:THR44 3.7 24.1 1.0
C Q:LYS43 3.8 20.1 1.0
C B:THR193 4.1 24.1 1.0
NH1 B:ARG173 4.2 26.4 1.0
CA Q:THR44 4.2 20.7 1.0
NH2 Q:ARG90 4.2 35.5 1.0
CA B:ASN194 4.4 25.2 1.0
N Q:LYS43 4.5 19.9 1.0
CB Q:LYS43 4.6 22.9 1.0
CB B:THR193 4.6 34.9 1.0
O B:HOH658 4.6 25.7 1.0
N B:ASN194 4.6 22.7 1.0
O B:HOH529 4.6 12.2 1.0
O Q:LYS43 4.7 21.2 1.0
O B:HOH600 4.7 22.7 1.0
O Q:CYS42 4.7 18.1 1.0
C Q:CYS42 4.9 17.4 1.0
CA B:THR193 4.9 24.0 1.0
SG Q:CYS42 5.0 28.2 1.0

Chlorine binding site 6 out of 11 in 8ecy

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Chlorine binding site 6 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl403

b:11.4
occ:1.00
 OG1 H:THR44 2.9 21.6 1.0
O D:HOH509 3.1 10.8 1.0
O H:HOH554 3.3 50.0 1.0
N H:THR44 3.4 18.9 1.0
CE H:MET29 3.6 32.6 1.0
OG1 D:THR193 3.6 34.9 1.0
CA H:LYS43 3.6 21.2 1.0
O D:THR193 3.6 24.2 1.0
CB H:THR44 3.7 24.1 1.0
C H:LYS43 3.7 20.1 1.0
C D:THR193 4.2 24.1 1.0
CA H:THR44 4.2 20.7 1.0
NH1 D:ARG173 4.2 26.4 1.0
NH2 H:ARG90 4.2 35.5 1.0
CA D:ASN194 4.4 25.2 1.0
N H:LYS43 4.5 19.9 1.0
CB H:LYS43 4.5 22.9 1.0
O D:HOH526 4.6 12.2 1.0
CB D:THR193 4.6 34.9 1.0
N D:ASN194 4.6 22.7 1.0
O D:HOH654 4.6 25.7 1.0
O H:LYS43 4.7 21.2 1.0
O H:CYS42 4.7 18.1 1.0
O D:HOH606 4.8 22.7 1.0
C H:CYS42 4.8 17.4 1.0
SG H:CYS42 4.9 28.2 1.0
CA D:THR193 5.0 24.0 1.0

Chlorine binding site 7 out of 11 in 8ecy

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Chlorine binding site 7 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:11.8
occ:1.00
 OG1 D:THR44 2.9 21.6 1.0
O D:HOH545 3.3 50.0 1.0
O A:HOH504 3.3 10.0 1.0
N D:THR44 3.4 18.9 1.0
CE D:MET29 3.5 32.6 1.0
CA D:LYS43 3.5 21.2 1.0
OG1 A:THR193 3.7 34.9 1.0
O A:THR193 3.7 24.2 1.0
C D:LYS43 3.7 20.1 1.0
CB D:THR44 3.7 24.1 1.0
CA D:THR44 4.2 20.7 1.0
NH1 A:ARG173 4.2 26.4 1.0
C A:THR193 4.2 24.1 1.0
NH2 D:ARG90 4.3 35.5 1.0
N D:LYS43 4.4 19.9 1.0
CB D:LYS43 4.5 22.9 1.0
CA A:ASN194 4.5 25.2 1.0
O A:HOH518 4.6 12.1 1.0
O D:LYS43 4.6 21.2 1.0
O D:CYS42 4.6 18.1 1.0
N A:ASN194 4.7 22.7 1.0
CB A:THR193 4.7 34.9 1.0
C D:CYS42 4.7 17.4 1.0
SG D:CYS42 4.8 28.2 1.0
CG D:MET29 5.0 31.6 1.0

Chlorine binding site 8 out of 11 in 8ecy

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Chlorine binding site 8 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:19.3
occ:1.00
 OG1 B:THR44 2.9 21.6 1.0
O F:HOH511 2.9 50.0 1.0
CE B:MET29 3.4 32.6 1.0
O B:HOH565 3.4 50.0 1.0
N B:THR44 3.5 18.9 1.0
OG1 F:THR193 3.7 34.9 1.0
CA B:LYS43 3.7 21.2 1.0
CB B:THR44 3.7 24.1 1.0
C B:LYS43 3.8 20.1 1.0
O F:THR193 3.8 24.2 1.0
NH1 F:ARG173 4.1 26.4 1.0
NH2 B:ARG90 4.1 35.5 1.0
CA B:THR44 4.2 20.7 1.0
C F:THR193 4.4 24.1 1.0
N B:LYS43 4.6 19.9 1.0
O F:HOH521 4.6 12.1 1.0
CA F:ASN194 4.7 25.2 1.0
CB B:LYS43 4.7 22.9 1.0
O B:LYS43 4.7 21.2 1.0
CB F:THR193 4.7 34.9 1.0
O B:CYS42 4.8 18.1 1.0
N F:ASN194 4.8 22.7 1.0
SG B:CYS42 4.8 28.2 1.0
C B:CYS42 4.9 17.4 1.0
OE2 F:GLU177 4.9 52.5 1.0
CG B:MET29 4.9 31.6 1.0
SD B:MET29 5.0 35.4 1.0

Chlorine binding site 9 out of 11 in 8ecy

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Chlorine binding site 9 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl403

b:16.5
occ:1.00
 OG1 F:THR44 2.9 21.6 1.0
O I:HOH505 3.2 50.0 1.0
O F:HOH561 3.3 50.0 1.0
N F:THR44 3.4 18.9 1.0
CE F:MET29 3.6 32.6 1.0
OG1 I:THR193 3.6 34.9 1.0
CA F:LYS43 3.6 21.2 1.0
O I:THR193 3.6 24.2 1.0
CB F:THR44 3.7 24.1 1.0
C F:LYS43 3.7 20.1 1.0
CA F:THR44 4.2 20.7 1.0
C I:THR193 4.2 24.1 1.0
NH1 I:ARG173 4.2 26.4 1.0
NH2 F:ARG90 4.2 35.5 1.0
CA I:ASN194 4.5 25.2 1.0
N F:LYS43 4.5 19.9 1.0
CB F:LYS43 4.5 22.9 1.0
O I:HOH535 4.6 12.2 1.0
CB I:THR193 4.6 34.9 1.0
N I:ASN194 4.6 22.7 1.0
O F:LYS43 4.7 21.2 1.0
O F:CYS42 4.7 18.1 1.0
O I:HOH567 4.8 19.3 1.0
C F:CYS42 4.8 17.4 1.0
SG F:CYS42 4.9 28.2 1.0
CA I:THR193 5.0 24.0 1.0

Chlorine binding site 10 out of 11 in 8ecy

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Chlorine binding site 10 out of 11 in the Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Cryoem Structure of Bovine Bestrophin-2 and Glutamine Synthetase Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cl403

b:12.8
occ:1.00
 OG1 I:THR44 2.9 21.6 1.0
O M:HOH504 3.2 50.0 1.0
O I:HOH547 3.3 50.0 1.0
N I:THR44 3.4 18.9 1.0
CE I:MET29 3.5 32.6 1.0
CA I:LYS43 3.5 21.2 1.0
OG1 M:THR193 3.7 34.9 1.0
O M:THR193 3.7 24.2 1.0
C I:LYS43 3.7 20.1 1.0
CB I:THR44 3.7 24.1 1.0
CA I:THR44 4.2 20.7 1.0
NH1 M:ARG173 4.2 26.4 1.0
C M:THR193 4.2 24.1 1.0
NH2 I:ARG90 4.3 35.5 1.0
N I:LYS43 4.4 19.9 1.0
CB I:LYS43 4.5 22.9 1.0
CA M:ASN194 4.5 25.2 1.0
O M:HOH528 4.5 11.4 1.0
O I:LYS43 4.6 21.2 1.0
O I:CYS42 4.6 18.1 1.0
N M:ASN194 4.7 22.7 1.0
CB M:THR193 4.7 34.9 1.0
C I:CYS42 4.7 17.4 1.0
O M:HOH588 4.8 24.2 1.0
SG I:CYS42 4.8 28.2 1.0
CG I:MET29 5.0 31.6 1.0

Reference:

A.P.Owji, K.Yu, A.Kittredge, J.Wang, Y.Zhang, T.Yang. Bestrophin-2 and Glutamine Synthetase Form A Complex For Glutamate Release. Nature V. 611 180 2022.
ISSN: ESSN 1476-4687
PubMed: 36289327
DOI: 10.1038/S41586-022-05373-X
Page generated: Tue Jul 30 08:59:10 2024

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