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Chlorine in PDB 8ejv: The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate

Protein crystallography data

The structure of The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate, PDB code: 8ejv was solved by C.Pham, T.Skarina, R.Di Leo, P.J.Stogios, R.Mahadevan, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.21 / 2.43
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 148.822, 148.822, 56.65, 90, 90, 120
R / Rfree (%) 20.8 / 25.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate (pdb code 8ejv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate, PDB code: 8ejv:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 8ejv

Go back to Chlorine Binding Sites List in 8ejv
Chlorine binding site 1 out of 3 in the The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:68.7
occ:1.00
O B:HOH446 3.6 63.8 1.0
N B:SER206 3.9 63.9 1.0
CB B:THR205 4.0 58.1 1.0
CA B:THR205 4.0 63.5 1.0
C B:THR205 4.5 60.1 1.0
CB B:SER206 4.6 67.6 1.0
CG2 B:THR205 4.8 58.5 1.0
CA B:SER206 4.9 62.9 1.0

Chlorine binding site 2 out of 3 in 8ejv

Go back to Chlorine Binding Sites List in 8ejv
Chlorine binding site 2 out of 3 in the The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:67.8
occ:1.00
NH2 B:ARG83 3.2 69.7 1.0
NH1 B:ARG50 3.2 60.7 1.0
CE A:MET45 3.3 74.8 1.0
CB B:SER47 3.4 57.1 1.0
CA B:SER47 3.6 51.8 1.0
CD B:ARG50 3.7 50.9 1.0
CB B:ALA80 3.9 63.4 1.0
N B:SER47 4.1 52.1 1.0
CZ B:ARG50 4.2 60.6 1.0
CZ B:ARG83 4.3 72.8 1.0
NE B:ARG50 4.4 57.6 1.0
CG2 B:THR46 4.5 59.0 1.0
CA B:ALA80 4.6 60.7 1.0
NE B:ARG83 4.7 72.5 1.0
CG B:ARG50 4.7 47.4 1.0
C B:THR46 4.7 53.7 1.0
OG B:SER47 4.8 69.8 1.0
CB B:ARG50 4.8 50.6 1.0
SG B:CYS84 4.8 56.6 1.0
SD A:MET45 4.8 89.7 1.0
C B:SER47 4.9 54.2 1.0
CG A:MET45 4.9 66.4 1.0
O B:ALA80 5.0 54.8 1.0
O B:THR46 5.0 51.5 1.0

Chlorine binding site 3 out of 3 in 8ejv

Go back to Chlorine Binding Sites List in 8ejv
Chlorine binding site 3 out of 3 in the The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:77.5
occ:1.00
OD2 B:ASP231 3.8 75.9 1.0
NH1 B:ARG207 4.1 82.1 1.0
NH2 B:ARG207 4.2 70.7 1.0
NH1 B:ARG239 4.4 87.0 1.0
NE2 B:GLN232 4.4 68.4 1.0
CZ B:ARG207 4.6 72.0 1.0
O B:HOH441 4.6 74.5 1.0
CG B:ASP231 4.7 68.6 1.0
OD1 B:ASP231 4.8 67.4 1.0
CG2 B:VAL262 4.8 82.5 1.0
CZ B:ARG239 4.9 85.0 1.0

Reference:

C.Pham, P.J.Stogios, R.Mahadevan, A.Savchenko. The Crystal Structure of Pseudomonas Putida Pcar in Complex with Succinate To Be Published.
Page generated: Tue Jul 30 09:01:08 2024

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