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Chlorine in PDB 8ezt: Crystal Structure of Hipb(Lp) From Legionella Pneumophila

Protein crystallography data

The structure of Crystal Structure of Hipb(Lp) From Legionella Pneumophila, PDB code: 8ezt was solved by P.J.Stogios, T.Skarina, R.Di Leo, J.Lin, A.Ensminger, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.02 / 2.06
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 59.444, 33.488, 74.161, 90, 102.73, 90
R / Rfree (%) 29.7 / 34.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Hipb(Lp) From Legionella Pneumophila (pdb code 8ezt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Hipb(Lp) From Legionella Pneumophila, PDB code: 8ezt:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 8ezt

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Chlorine binding site 1 out of 6 in the Crystal Structure of Hipb(Lp) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hipb(Lp) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl101

b:37.6
occ:1.00
O A:HOH203 2.8 26.6 1.0
N A:ILE61 2.9 36.5 1.0
CA A:GLN60 3.4 32.0 1.0
CB A:GLN60 3.6 32.9 1.0
C A:GLN60 3.7 31.1 1.0
CD1 A:LEU51 3.8 33.9 0.5
CA A:ILE61 3.9 44.6 1.0
CB A:ILE61 4.0 36.6 1.0
CG A:GLN60 4.0 34.3 1.0
O A:ILE61 4.0 30.5 1.0
CD2 A:LEU51 4.2 25.0 0.5
CG1 A:ILE61 4.3 36.1 1.0
C A:ILE61 4.5 32.1 1.0
CG A:LEU51 4.6 30.9 0.5
O A:ILE59 4.6 33.1 1.0
N A:GLN60 4.7 34.3 1.0
O A:GLN60 4.9 34.9 1.0

Chlorine binding site 2 out of 6 in 8ezt

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Chlorine binding site 2 out of 6 in the Crystal Structure of Hipb(Lp) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hipb(Lp) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl102

b:47.4
occ:1.00
NZ A:LYS15 2.7 47.7 1.0
CE A:LYS15 3.3 50.0 1.0
NE2 A:HIS11 3.8 39.4 1.0
NH2 A:ARG14 4.2 37.5 1.0
CD2 A:HIS11 4.5 37.8 1.0
NE2 A:GLN21 4.5 57.0 1.0
CD A:LYS15 4.8 44.0 1.0
CE1 A:HIS11 4.9 39.4 1.0

Chlorine binding site 3 out of 6 in 8ezt

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Chlorine binding site 3 out of 6 in the Crystal Structure of Hipb(Lp) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Hipb(Lp) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl101

b:55.9
occ:1.00
NZ B:LYS15 3.2 48.5 1.0
NH2 B:ARG14 3.5 36.8 1.0
CE1 B:HIS11 3.7 30.6 1.0
O A:HOH219 4.0 29.7 1.0
CD B:LYS15 4.1 29.9 1.0
CE B:LYS15 4.1 34.8 1.0
ND1 B:HIS11 4.3 34.2 1.0
CZ B:ARG14 4.7 36.1 1.0
NE2 B:HIS11 4.7 26.4 1.0
NE2 B:GLN21 4.7 53.7 1.0
O B:HOH230 4.7 34.4 1.0
NH1 B:ARG14 4.9 30.5 1.0

Chlorine binding site 4 out of 6 in 8ezt

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Chlorine binding site 4 out of 6 in the Crystal Structure of Hipb(Lp) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Hipb(Lp) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl102

b:62.2
occ:1.00
N B:LYS32 3.9 29.9 1.0
CA B:GLY31 4.1 34.0 1.0
C B:GLY31 4.5 30.7 1.0
OG1 B:THR33 4.7 45.6 1.0
CB B:LYS32 4.7 54.2 1.0
N B:THR33 4.8 40.5 1.0
CA B:LYS32 4.9 39.5 1.0

Chlorine binding site 5 out of 6 in 8ezt

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Chlorine binding site 5 out of 6 in the Crystal Structure of Hipb(Lp) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Hipb(Lp) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl101

b:61.2
occ:1.00
O C:GLY0 3.2 45.5 1.0
C C:GLY0 3.5 43.8 1.0
N C:MET1 4.1 45.2 1.0
CA C:GLY0 4.1 43.5 1.0
CG B:GLN60 4.2 21.1 1.0
CA C:MET1 4.4 43.2 1.0
CB B:GLN60 4.9 23.9 1.0
O B:HOH225 4.9 26.4 1.0
O B:HOH236 5.0 39.3 1.0

Chlorine binding site 6 out of 6 in 8ezt

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Chlorine binding site 6 out of 6 in the Crystal Structure of Hipb(Lp) From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Hipb(Lp) From Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl101

b:53.0
occ:1.00
ND2 D:ASN8 3.4 31.6 1.0
N D:LEU9 3.9 23.2 1.0
C D:ASN8 4.0 31.9 1.0
O D:ASN8 4.0 28.1 1.0
CB D:ASN8 4.0 24.6 1.0
CA D:LEU9 4.1 31.8 1.0
CG D:ASN8 4.1 25.6 1.0
CB D:LEU9 4.7 30.4 1.0
CA D:ASN8 4.7 28.9 1.0
O D:GLU5 4.8 24.2 1.0
CB D:TYR12 5.0 22.9 1.0

Reference:

P.J.Stogios, P.J.Stogios, T.Skarina, R.Di Leo, J.Lin, A.Ensminger, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Ofinfectious Diseases (Csgid). N/A N/A.
Page generated: Thu Dec 28 03:11:42 2023

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