Chlorine in PDB 8f3a: Hiv-1 GP41 Coiled-Coil Pocket IQN17

The structure of Hiv-1 GP41 Coiled-Coil Pocket IQN17, PDB code: 8f3a was solved by T.U.J.Bruun, S.Tang, D.Fernandez, P.S.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	16.44 / 1.20
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	45.857, 46.962, 136.289, 90, 90, 90
R / Rfree (%)	17.4 / 18.7

The binding sites of Chlorine atom in the Hiv-1 GP41 Coiled-Coil Pocket IQN17 (pdb code 8f3a). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Hiv-1 GP41 Coiled-Coil Pocket IQN17, PDB code: 8f3a:

Chlorine binding site 1 out of 1 in the Hiv-1 GP41 Coiled-Coil Pocket IQN17


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hiv-1 GP41 Coiled-Coil Pocket IQN17 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl102 b:19.4 occ:1.00 HE21 A:GLN16 2.5 22.1 1.0 HE21 C:GLN16 2.5 19.1 1.0 HE21 B:GLN16 2.5 20.1 1.0 HG3 C:GLN16 3.1 17.8 1.0 HG3 A:GLN16 3.1 19.0 1.0 HG3 B:GLN16 3.2 20.3 1.0 NE2 A:GLN16 3.3 18.4 1.0 NE2 C:GLN16 3.3 15.9 1.0 NE2 B:GLN16 3.3 16.8 1.0 HD12 C:ILE19 3.5 18.2 1.0 HD12 B:ILE19 3.5 16.9 1.0 HD12 A:ILE19 3.5 16.1 1.0 HB2 C:GLN16 3.6 16.2 1.0 HD13 C:ILE19 3.7 18.2 1.0 HA C:GLN16 3.7 15.1 1.0 HD13 B:ILE19 3.8 16.9 1.0 CG C:GLN16 3.8 14.8 1.0 HE22 A:GLN16 3.8 22.1 1.0 HA A:GLN16 3.8 13.4 1.0 HD13 A:ILE19 3.9 16.1 1.0 CG A:GLN16 3.9 15.8 1.0 HE22 B:GLN16 3.9 20.1 1.0 HB2 A:GLN16 3.9 15.8 1.0 HE22 C:GLN16 3.9 19.1 1.0 CG B:GLN16 4.0 16.9 1.0 HA B:GLN16 4.0 14.5 1.0 HB2 B:GLN16 4.0 16.7 1.0 CD C:GLN16 4.0 17.1 1.0 CD1 C:ILE19 4.0 15.2 1.0 CD A:GLN16 4.0 19.0 1.0 CD1 B:ILE19 4.1 14.1 1.0 CB C:GLN16 4.1 13.5 1.0 CD B:GLN16 4.1 19.0 1.0 CD1 A:ILE19 4.1 13.4 1.0 CB A:GLN16 4.3 13.1 1.0 CB B:GLN16 4.4 13.9 1.0 CA C:GLN16 4.4 12.6 1.0 HD11 B:ILE19 4.5 16.9 1.0 HG21 C:ILE19 4.5 15.0 1.0 HD11 C:ILE19 4.5 18.2 1.0 CA A:GLN16 4.5 11.2 1.0 HG21 B:ILE19 4.5 15.6 1.0 HG21 A:ILE19 4.6 13.7 1.0 HD11 A:ILE19 4.6 16.1 1.0 HG2 C:GLN16 4.6 17.8 1.0 CA B:GLN16 4.7 12.1 1.0 HG2 A:GLN16 4.7 19.0 1.0 HB C:ILE19 4.7 13.8 1.0 HG2 B:GLN16 4.8 20.3 1.0 HB A:ILE19 4.9 13.0 1.0 HG23 B:ILE12 4.9 16.2 1.0 HB B:ILE19 4.9 14.2 1.0 HG23 A:ILE12 5.0 15.9 1.0

T.J.Bruun, S.Tang, G.Erwin, L.Deis, D.Fernandez, P.Kim. Structure-Guided Stabilization Improves the Ability of the Hiv-1 GP41 Hydrophobic Pocket to Elicit Neutralizing Antibodies. J.Biol.Chem. 03062 2023.
ISSN: ESSN 1083-351X
PubMed: 36841484
DOI: 10.1016/J.JBC.2023.103062