Chlorine in PDB 8gjt: Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1

The structure of Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1, PDB code: 8gjt was solved by W.D.Tolbert, D.N.Nguyen, M.Pazgier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.77 / 3.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.67, 66.01, 87.83, 90, 90, 90
R / Rfree (%)	25.4 / 30.7

The structure of Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1 also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1 (pdb code 8gjt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1, PDB code: 8gjt:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl511 b:82.8 occ:1.00 CL1 A:ZNF511 0.0 82.8 1.0 C18 A:ZNF511 1.8 64.6 1.0 C16 A:ZNF511 2.7 61.8 1.0 C20 A:ZNF511 2.8 57.0 1.0 F17 A:ZNF511 2.9 64.2 1.0 CD1 A:PHE382 3.2 71.3 1.0 CE1 A:PHE382 3.3 72.7 1.0 C A:PHE376 3.3 71.5 1.0 CG1 A:VAL255 3.4 58.4 1.0 CA A:PHE376 3.4 65.0 1.0 O A:PHE376 3.6 70.3 1.0 N A:ASN377 3.8 70.0 1.0 N A:PHE376 3.9 62.8 1.0 O A:VAL255 4.0 67.1 1.0 C15 A:ZNF511 4.0 63.0 1.0 C21 A:ZNF511 4.0 61.2 1.0 C A:THR375 4.2 71.0 1.0 O A:THR375 4.3 72.9 1.0 CB A:ASN377 4.3 64.8 1.0 CG2 A:THR375 4.3 74.7 1.0 CA A:ASN377 4.5 61.7 1.0 CH2 A:TRP112 4.5 64.4 1.0 CG A:PHE382 4.5 70.5 1.0 C A:VAL255 4.5 65.3 1.0 C14 A:ZNF511 4.6 66.1 1.0 CZ A:PHE382 4.6 75.4 1.0 CB A:VAL255 4.6 61.3 1.0 CB A:PHE376 4.8 63.4 1.0 CB A:THR375 4.9 73.4 1.0 CZ3 A:TRP112 5.0 62.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Hiv-1 Lm/Ht Clade A/E CRF01 GP120 Core in Complex with Tfh-I-116-D1 within 5.0Å range:

S.Ding, W.D.Tolbert, H.Zhu, D.Lee, L.Marchitto, T.Higgins, X.Zhao, D.Nguyen, R.Sherburn, J.Richard, G.Gendron-Lepage, H.Medjahed, M.Mohammadi, C.Abrams, M.Pazgier, A.B.Smith Iii, A.Finzi. Piperidine CD4-Mimetic Compounds Expose Vulnerable Env Epitopes Sensitizing Hiv-1-Infected Cells to Adcc. Viruses V. 15 2023.
ISSN: ESSN 1999-4915
PubMed: 37243271
DOI: 10.3390/V15051185