Chlorine in PDB 8gmw: Crystal Structure of Lysozyme

All present enzymatic activity of Crystal Structure of Lysozyme:
3.2.1.17;

The structure of Crystal Structure of Lysozyme, PDB code: 8gmw was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.15 / 1.35
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.941, 78.941, 37.106, 90, 90, 90
R / Rfree (%)	17.9 / 19.4

The structure of Crystal Structure of Lysozyme also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Lysozyme (pdb code 8gmw). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Lysozyme, PDB code: 8gmw:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:13.7 occ:1.00 OH A:TYR41 3.0 9.8 1.0 O A:HOH357 3.3 13.0 1.0 O A:HOH346 3.4 31.6 1.0 CE2 A:TYR41 3.7 8.8 1.0 CZ A:TYR41 3.7 9.2 1.0 CA A:GLY122 4.1 11.2 1.0 O A:ARG39 4.6 12.4 1.0 N A:GLY122 4.7 11.5 1.0 CD2 A:TYR41 4.9 9.3 1.0 CE1 A:TYR41 5.0 8.8 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:16.5 occ:1.00 OG A:SER42 2.9 15.3 1.0 O A:HOH424 3.0 27.6 1.0 N A:GLY44 3.1 10.2 1.0 CA A:GLY44 3.5 9.8 1.0 CB A:SER42 3.5 13.3 1.0 CA A:GLN139 3.6 16.7 1.0 CD1 A:ILE142 3.9 22.5 1.0 CB A:GLN139 4.0 18.2 1.0 N A:GLN139 4.0 14.7 1.0 CG A:GLN139 4.2 21.1 1.0 CG1 A:ILE142 4.2 17.8 1.0 N A:LEU43 4.2 10.5 1.0 CG2 A:VAL138 4.3 14.1 1.0 C A:SER42 4.3 10.8 1.0 C A:LEU43 4.3 11.5 1.0 C A:VAL138 4.4 14.6 1.0 O A:VAL138 4.4 12.6 1.0 C A:GLY44 4.5 8.8 1.0 CA A:SER42 4.6 11.2 1.0 N A:ASN45 4.7 10.1 1.0 CA A:LEU43 4.7 11.9 1.0 O A:SER42 4.8 12.0 1.0 C A:GLN139 4.8 15.4 1.0 CB A:LEU43 5.0 14.2 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:14.5 occ:1.00 O A:HOH369 3.1 10.4 1.0 O A:HOH448 3.1 22.1 1.0 O A:HOH421 3.2 22.1 1.0 N A:THR87 3.2 12.2 1.0 O A:THR87 3.3 14.3 1.0 O A:HOH370 3.4 24.9 1.0 N A:ARG86 3.5 11.4 1.0 C A:GLY85 3.5 13.8 1.0 OG A:SER90 3.6 14.2 1.0 CA A:GLY85 3.6 12.0 1.0 N A:GLY85 3.7 10.9 1.0 C A:THR87 3.7 13.8 1.0 OD1 A:ASN83 3.8 13.0 1.0 CA A:THR87 3.9 13.3 1.0 O A:HOH367 4.0 14.0 1.0 O A:GLY85 4.1 15.8 1.0 CB A:THR87 4.2 11.8 1.0 C A:ARG86 4.2 13.6 1.0 OD1 A:ASP84 4.3 10.5 1.0 CA A:ARG86 4.3 12.5 1.0 N A:PRO88 4.5 12.6 1.0 NA A:NA201 4.7 12.4 1.0 C A:ASP84 4.8 10.3 1.0 OG1 A:THR87 4.8 11.9 1.0 CB A:SER90 4.8 15.8 1.0 O A:HOH379 4.8 19.6 0.5 N A:ASP84 4.9 8.7 1.0 CG A:ASN83 5.0 12.0 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:23.0 occ:1.00 O A:HOH451 2.8 32.8 1.0 O A:HOH457 3.2 24.4 1.0 N A:ILE106 3.4 11.8 1.0 O A:HOH328 3.5 25.0 1.0 CG1 A:ILE106 3.7 12.3 1.0 CA A:ASP105 3.9 13.9 1.0 CE1 A:HIS33 3.9 22.0 1.0 O A:SER104 4.1 17.5 1.0 C A:ASP105 4.1 12.8 1.0 CB A:ALA29 4.1 14.0 1.0 OD1 A:ASP105 4.1 18.2 1.0 CG2 A:ILE106 4.3 13.2 1.0 CB A:ILE106 4.3 11.4 1.0 CZ A:PHE21 4.3 12.3 1.0 CA A:ILE106 4.4 11.6 1.0 CG A:ASP105 4.5 22.5 1.0 O A:HOH404 4.6 34.3 1.0 CD1 A:ILE106 4.6 14.2 1.0 ND1 A:HIS33 4.6 18.6 1.0 CB A:ASP105 4.7 18.5 1.0 NE2 A:HIS33 4.8 24.7 1.0 CE2 A:PHE21 4.8 13.3 1.0 N A:ASP105 4.9 13.2 1.0 C A:SER104 4.9 15.7 1.0

K.H.Nam, K.H.Nam. N/A N/A.