Chlorine in PDB 8gr8: Crystal Structure of Peroxisomal Citrate Synthase (CIT2) From Saccharomycescerevisiae

The structure of Crystal Structure of Peroxisomal Citrate Synthase (CIT2) From Saccharomycescerevisiae, PDB code: 8gr8 was solved by K.Nishio, K.Nakatsukasa, T.Kamura, T.Mizushima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.44 / 2.39
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	108.715, 108.715, 86.952, 90, 90, 90
R / Rfree (%)	17.7 / 22.8

The binding sites of Chlorine atom in the Crystal Structure of Peroxisomal Citrate Synthase (CIT2) From Saccharomycescerevisiae (pdb code 8gr8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Peroxisomal Citrate Synthase (CIT2) From Saccharomycescerevisiae, PDB code: 8gr8:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Peroxisomal Citrate Synthase (CIT2) From Saccharomycescerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Peroxisomal Citrate Synthase (CIT2) From Saccharomycescerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl501 b:41.6 occ:1.00 NE B:ARG440 3.2 46.3 1.0 N A:VAL262 3.3 30.3 1.0 CA A:ASN261 3.5 32.6 1.0 NH2 B:ARG440 3.5 46.0 1.0 CB A:ASN261 3.6 33.4 1.0 CG2 A:VAL262 3.6 37.7 1.0 ND1 A:HIS293 3.8 40.1 1.0 CZ B:ARG440 3.8 50.0 1.0 C A:ASN261 3.9 37.2 1.0 CD1 B:ILE438 4.0 35.8 1.0 CE1 A:HIS293 4.0 34.6 1.0 O A:HOH685 4.1 44.0 1.0 CB A:VAL262 4.2 34.4 1.0 CD B:ARG440 4.2 39.4 1.0 CG A:HIS293 4.2 40.9 1.0 CA A:VAL262 4.3 30.6 1.0 CG B:ARG440 4.4 41.6 1.0 NE2 A:HIS293 4.6 32.9 1.0 CD2 A:HIS293 4.7 36.5 1.0 N A:ASN261 4.7 30.4 1.0 CB B:ARG440 4.7 41.9 1.0 CB A:HIS293 4.8 39.8 1.0 CG1 B:ILE438 4.9 34.4 1.0 O A:GLY260 5.0 34.3 1.0 CG A:ASN261 5.0 34.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Peroxisomal Citrate Synthase (CIT2) From Saccharomycescerevisiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Peroxisomal Citrate Synthase (CIT2) From Saccharomycescerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl502 b:47.2 occ:1.00 N B:VAL262 3.3 33.7 1.0 NE A:ARG440 3.3 46.5 1.0 CA B:ASN261 3.5 29.7 1.0 CB B:ASN261 3.6 23.8 1.0 ND1 B:HIS293 3.6 37.9 1.0 NH2 A:ARG440 3.7 40.4 1.0 CG2 B:VAL262 3.7 32.6 1.0 C B:ASN261 3.9 32.8 1.0 CE1 B:HIS293 3.9 41.0 1.0 CZ A:ARG440 3.9 37.3 1.0 CD1 A:ILE438 4.0 34.3 1.0 CB B:VAL262 4.1 36.6 1.0 CG B:HIS293 4.1 41.9 1.0 CA B:VAL262 4.3 32.0 1.0 CD A:ARG440 4.3 30.7 1.0 CG A:ARG440 4.5 39.6 1.0 NE2 B:HIS293 4.5 39.3 1.0 CD2 B:HIS293 4.6 35.5 1.0 CB B:HIS293 4.6 37.7 1.0 CB A:ARG440 4.8 32.6 1.0 N B:ASN261 4.8 37.6 1.0 CG B:ASN261 4.9 37.6 1.0 CG1 A:ILE438 4.9 34.1 1.0 CA B:HIS293 5.0 37.7 1.0

K.Nishio, T.Kawarasaki, Y.Sugiura, S.Matsumoto, A.Konoshima, Y.Takano, M.Hayashi, F.Okumura, T.Kamura, T.Mizushima, K.Nakatsukasa. Defective Import of Mitochondrial Metabolic Enzyme Elicits Ectopic Metabolic Stress. Sci Adv V. 9 F1956 2023.
ISSN: ESSN 2375-2548
PubMed: 37058555
DOI: 10.1126/SCIADV.ADF1956