Chlorine in PDB 8h8v: Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge)

All present enzymatic activity of Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge):
3.2.1.17;

The structure of Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge), PDB code: 8h8v was solved by Y.Kim, K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.78 / 1.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.88, 78.88, 38.05, 90, 90, 90
R / Rfree (%)	22.6 / 25.6

The structure of Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge) also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge) (pdb code 8h8v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge), PDB code: 8h8v:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl201 b:21.4 occ:1.00 ND2 A:ASN131 3.2 17.2 1.0 CB A:ASN131 3.6 13.4 1.0 CG A:ASN131 3.9 17.2 1.0 CA A:ALA128 3.9 14.6 1.0 O A:VAL127 4.0 14.2 1.0 CG1 A:VAL127 4.1 25.2 1.0 N A:ALA128 4.3 13.1 1.0 C A:VAL127 4.3 8.9 1.0 CD A:ARG132 4.4 16.3 1.0 CG A:ARG132 4.5 20.1 1.0 CB A:ALA128 4.6 12.7 1.0 CB A:VAL127 4.9 20.4 1.0 CA A:ASN131 4.9 15.4 1.0 C A:ALA128 5.0 12.8 1.0

Chlorine binding site 2 out of 2 in the Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:29.6 occ:1.00 O A:HOH364 2.8 37.6 1.0 N A:GLY44 3.0 13.5 1.0 OG A:SER42 3.1 19.5 1.0 CD1 A:ILE142 3.4 35.3 1.0 O A:HOH385 3.4 35.0 1.0 CB A:SER42 3.4 22.7 1.0 CA A:GLY44 3.4 12.3 1.0 CA A:GLN139 3.7 25.1 1.0 N A:GLN139 4.0 26.4 1.0 N A:LEU43 4.0 13.7 1.0 CB A:GLN139 4.1 29.4 1.0 CG1 A:ILE142 4.2 20.3 1.0 CG A:GLN139 4.2 40.8 1.0 C A:LEU43 4.2 15.1 1.0 C A:SER42 4.3 20.6 1.0 O A:VAL138 4.3 20.0 1.0 C A:VAL138 4.3 20.4 1.0 CG2 A:VAL138 4.4 17.4 1.0 CA A:SER42 4.5 15.2 1.0 C A:GLY44 4.6 14.5 1.0 CA A:LEU43 4.6 15.7 1.0 N A:ASN45 4.7 10.3 1.0 O A:SER42 4.8 13.5 1.0 C A:GLN139 4.9 27.5 1.0 CB A:LEU43 4.9 14.7 1.0

Y.Kim, K.H.Nam. Pink-Beam Serial Synchrotron Crystallography at Pohang Light Source II Crystals V. 12 2022.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST12111637