Chlorine in PDB 8hq5: G6 in Complex with CRM1-Ran-RANBP1
Protein crystallography data
The structure of G6 in Complex with CRM1-Ran-RANBP1, PDB code: 8hq5
was solved by
Q.Sun,
Y.Lei,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.01 /
2.25
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.58,
105.58,
304.909,
90,
90,
90
|
R / Rfree (%)
|
17.5 /
20.9
|
Other elements in 8hq5:
The structure of G6 in Complex with CRM1-Ran-RANBP1 also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Chlorine atom in the G6 in Complex with CRM1-Ran-RANBP1
(pdb code 8hq5). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the
G6 in Complex with CRM1-Ran-RANBP1, PDB code: 8hq5:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 12 in 8hq5
Go back to
Chlorine Binding Sites List in 8hq5
Chlorine binding site 1 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:89.3
occ:1.00
|
O
|
A:HOH472
|
3.5
|
62.2
|
1.0
|
O
|
A:PRO49
|
3.6
|
55.9
|
1.0
|
N
|
A:VAL51
|
3.9
|
53.2
|
1.0
|
CA
|
A:LEU50
|
4.1
|
53.0
|
1.0
|
C
|
A:PRO49
|
4.4
|
54.6
|
1.0
|
C
|
A:LEU50
|
4.5
|
53.6
|
1.0
|
CD1
|
A:LEU50
|
4.5
|
54.8
|
1.0
|
CG2
|
A:VAL51
|
4.6
|
60.8
|
1.0
|
CD2
|
A:LEU31
|
4.6
|
56.3
|
1.0
|
CB
|
A:VAL51
|
4.6
|
59.7
|
1.0
|
N
|
A:LEU50
|
4.6
|
53.7
|
1.0
|
CA
|
A:VAL51
|
4.8
|
55.3
|
1.0
|
O
|
A:LEU31
|
4.9
|
49.9
|
1.0
|
O
|
A:VAL51
|
5.0
|
53.0
|
1.0
|
|
Chlorine binding site 2 out
of 12 in 8hq5
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Chlorine Binding Sites List in 8hq5
Chlorine binding site 2 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1101
b:93.8
occ:1.00
|
O
|
C:HOH1482
|
3.5
|
63.8
|
1.0
|
CD
|
C:LYS567
|
3.6
|
59.2
|
1.0
|
NE2
|
C:HIS609
|
3.7
|
55.0
|
1.0
|
CE
|
C:LYS567
|
3.8
|
62.9
|
1.0
|
CD2
|
C:HIS609
|
3.9
|
55.6
|
1.0
|
NZ
|
C:LYS567
|
4.0
|
66.3
|
1.0
|
CB
|
C:TYR608
|
4.2
|
64.2
|
1.0
|
CG
|
C:LYS567
|
4.2
|
55.3
|
1.0
|
CD2
|
C:TYR608
|
4.4
|
70.3
|
1.0
|
CG
|
C:TYR608
|
4.6
|
67.8
|
1.0
|
O
|
C:HOH1557
|
4.7
|
73.5
|
1.0
|
CE1
|
C:HIS609
|
4.9
|
57.5
|
1.0
|
CB
|
C:LYS567
|
4.9
|
53.7
|
1.0
|
|
Chlorine binding site 3 out
of 12 in 8hq5
Go back to
Chlorine Binding Sites List in 8hq5
Chlorine binding site 3 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1102
b:78.6
occ:1.00
|
N
|
C:ALA328
|
3.7
|
51.2
|
1.0
|
O
|
C:ARG325
|
3.7
|
45.7
|
1.0
|
CB
|
C:ALA328
|
3.9
|
52.2
|
1.0
|
N
|
C:ARG327
|
3.9
|
49.1
|
1.0
|
O
|
C:HOH1596
|
4.0
|
69.6
|
1.0
|
C
|
C:ARG325
|
4.0
|
49.2
|
1.0
|
O
|
C:ALA324
|
4.0
|
49.5
|
1.0
|
CG
|
C:ARG327
|
4.1
|
51.7
|
1.0
|
N
|
C:ASN326
|
4.3
|
48.8
|
1.0
|
CA
|
C:ALA328
|
4.4
|
52.4
|
1.0
|
O
|
C:LEU323
|
4.4
|
45.3
|
1.0
|
C
|
C:ASN326
|
4.4
|
48.8
|
1.0
|
C
|
C:ARG327
|
4.6
|
49.6
|
1.0
|
CA
|
C:ARG327
|
4.6
|
52.5
|
1.0
|
O
|
C:HOH1473
|
4.7
|
56.3
|
1.0
|
CA
|
C:ASN326
|
4.7
|
48.7
|
1.0
|
C
|
C:ALA324
|
4.7
|
45.9
|
1.0
|
NE
|
C:ARG327
|
4.8
|
50.1
|
1.0
|
CA
|
C:ARG325
|
4.8
|
49.5
|
1.0
|
CB
|
C:ARG327
|
4.9
|
51.9
|
1.0
|
CZ
|
C:ARG327
|
5.0
|
51.2
|
1.0
|
|
Chlorine binding site 4 out
of 12 in 8hq5
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Chlorine Binding Sites List in 8hq5
Chlorine binding site 4 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1103
b:92.2
occ:1.00
|
NH1
|
C:ARG77
|
3.2
|
95.2
|
1.0
|
NE2
|
C:HIS1005
|
3.9
|
49.5
|
1.0
|
O
|
C:LYS1040
|
4.0
|
51.4
|
1.0
|
CD2
|
C:HIS1005
|
4.1
|
49.1
|
1.0
|
O
|
C:ILE1039
|
4.1
|
48.9
|
1.0
|
C
|
C:LYS1040
|
4.2
|
48.5
|
1.0
|
CE1
|
C:HIS1005
|
4.2
|
49.5
|
1.0
|
N
|
C:GLU1041
|
4.4
|
48.0
|
1.0
|
CG
|
C:HIS1005
|
4.4
|
48.8
|
1.0
|
CZ
|
C:ARG77
|
4.5
|
91.4
|
1.0
|
ND1
|
C:HIS1005
|
4.5
|
50.8
|
1.0
|
CA
|
C:GLU1041
|
4.5
|
50.1
|
1.0
|
O
|
C:GLU1041
|
4.5
|
48.2
|
1.0
|
C
|
C:GLU1041
|
4.6
|
48.8
|
1.0
|
CG2
|
C:VAL1042
|
4.7
|
47.7
|
1.0
|
CA
|
C:LYS1040
|
4.8
|
50.6
|
1.0
|
|
Chlorine binding site 5 out
of 12 in 8hq5
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Chlorine Binding Sites List in 8hq5
Chlorine binding site 5 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1104
b:99.1
occ:1.00
|
CB
|
C:SER187
|
4.2
|
57.6
|
1.0
|
OG
|
C:SER187
|
4.2
|
58.9
|
1.0
|
OD1
|
C:ASN184
|
4.2
|
52.4
|
1.0
|
O
|
C:LYS183
|
4.2
|
47.4
|
1.0
|
CB
|
C:LYS183
|
4.3
|
49.1
|
1.0
|
C
|
C:LYS183
|
4.3
|
50.5
|
1.0
|
CE1
|
C:PHE167
|
4.4
|
45.9
|
1.0
|
CZ
|
C:PHE167
|
4.5
|
47.9
|
1.0
|
N
|
C:ASN184
|
4.6
|
49.0
|
1.0
|
CA
|
C:LYS183
|
4.9
|
50.1
|
1.0
|
CA
|
C:ASN184
|
4.9
|
49.5
|
1.0
|
|
Chlorine binding site 6 out
of 12 in 8hq5
Go back to
Chlorine Binding Sites List in 8hq5
Chlorine binding site 6 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1107
b:88.4
occ:1.00
|
O
|
C:HOH1541
|
3.5
|
69.2
|
1.0
|
O
|
C:HOH1428
|
3.8
|
67.2
|
1.0
|
CB
|
C:TRP891
|
4.0
|
50.6
|
1.0
|
CB
|
C:ASN846
|
4.1
|
52.8
|
1.0
|
CG
|
C:TRP891
|
4.1
|
49.5
|
1.0
|
O
|
C:ASP887
|
4.1
|
53.5
|
1.0
|
CD2
|
C:TRP891
|
4.2
|
51.0
|
1.0
|
CE3
|
C:TRP891
|
4.3
|
52.4
|
1.0
|
CB
|
C:ASP887
|
4.3
|
57.2
|
1.0
|
C
|
C:ASP887
|
4.5
|
54.0
|
1.0
|
ND2
|
C:ASN846
|
4.5
|
50.9
|
1.0
|
CD1
|
C:TRP891
|
4.8
|
50.9
|
1.0
|
CG
|
C:ASN846
|
4.8
|
52.9
|
1.0
|
CE2
|
C:TRP891
|
4.9
|
51.0
|
1.0
|
CA
|
C:ASP887
|
4.9
|
54.0
|
1.0
|
|
Chlorine binding site 7 out
of 12 in 8hq5
Go back to
Chlorine Binding Sites List in 8hq5
Chlorine binding site 7 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1108
b:106.0
occ:1.00
|
O
|
C:HOH1512
|
3.3
|
47.5
|
1.0
|
OE1
|
C:GLU839
|
3.5
|
71.0
|
1.0
|
CD2
|
C:LEU877
|
3.8
|
72.8
|
1.0
|
CB
|
C:ALA881
|
4.2
|
61.2
|
1.0
|
CA
|
C:GLN835
|
4.3
|
57.0
|
1.0
|
CD
|
C:GLU839
|
4.4
|
63.5
|
1.0
|
CG
|
C:GLU839
|
4.4
|
59.4
|
1.0
|
CD2
|
C:PHE838
|
4.4
|
52.6
|
1.0
|
CG
|
C:GLN835
|
4.8
|
62.0
|
1.0
|
O
|
C:LEU834
|
4.8
|
56.6
|
1.0
|
N
|
C:GLN835
|
4.8
|
53.3
|
1.0
|
O
|
C:GLN835
|
5.0
|
63.0
|
1.0
|
|
Chlorine binding site 8 out
of 12 in 8hq5
Go back to
Chlorine Binding Sites List in 8hq5
Chlorine binding site 8 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1110
b:99.3
occ:1.00
|
OG1
|
C:THR944
|
3.9
|
53.0
|
1.0
|
CB
|
C:ALA1002
|
3.9
|
48.1
|
1.0
|
CA
|
C:PHE941
|
4.1
|
58.8
|
1.0
|
N
|
C:PHE941
|
4.1
|
55.3
|
1.0
|
C
|
C:PHE940
|
4.3
|
52.6
|
1.0
|
CE2
|
C:PHE1003
|
4.3
|
45.6
|
1.0
|
O
|
C:PHE940
|
4.4
|
51.8
|
1.0
|
CB
|
C:PHE940
|
4.5
|
53.6
|
1.0
|
CZ
|
C:PHE1003
|
4.6
|
44.9
|
1.0
|
CE
|
C:MET998
|
4.7
|
55.9
|
1.0
|
CB
|
C:PHE941
|
4.7
|
64.3
|
1.0
|
CD1
|
C:PHE941
|
4.8
|
74.0
|
1.0
|
SD
|
C:MET998
|
4.9
|
54.9
|
1.0
|
CG
|
C:MET998
|
5.0
|
52.0
|
1.0
|
O
|
C:SER937
|
5.0
|
51.2
|
1.0
|
|
Chlorine binding site 9 out
of 12 in 8hq5
Go back to
Chlorine Binding Sites List in 8hq5
Chlorine binding site 9 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1111
b:72.0
occ:1.00
|
O
|
C:HOH1382
|
3.4
|
48.4
|
1.0
|
CB
|
C:GLU357
|
3.9
|
44.0
|
1.0
|
CD
|
C:GLN313
|
3.9
|
43.6
|
1.0
|
O
|
A:LEU144
|
4.1
|
43.2
|
1.0
|
CG
|
C:GLN313
|
4.1
|
44.1
|
1.0
|
OE1
|
C:GLN313
|
4.1
|
45.8
|
1.0
|
NE2
|
C:GLN313
|
4.1
|
41.3
|
1.0
|
N
|
C:LEU358
|
4.2
|
43.4
|
1.0
|
C
|
C:GLU357
|
4.3
|
45.1
|
1.0
|
CD2
|
A:HIS139
|
4.5
|
43.9
|
1.0
|
CA
|
A:ARG140
|
4.6
|
42.2
|
1.0
|
CA
|
C:LEU358
|
4.6
|
43.7
|
1.0
|
O
|
C:GLU357
|
4.7
|
48.0
|
1.0
|
CB
|
C:LEU358
|
4.7
|
43.5
|
1.0
|
CA
|
C:GLU357
|
4.7
|
45.7
|
1.0
|
O
|
A:HIS139
|
4.8
|
41.0
|
1.0
|
O
|
A:ARG140
|
4.9
|
42.8
|
1.0
|
CB
|
C:GLN313
|
4.9
|
42.5
|
1.0
|
|
Chlorine binding site 10 out
of 12 in 8hq5
Go back to
Chlorine Binding Sites List in 8hq5
Chlorine binding site 10 out
of 12 in the G6 in Complex with CRM1-Ran-RANBP1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of G6 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1112
b:93.3
occ:1.00
|
O
|
C:HOH1516
|
3.1
|
61.3
|
1.0
|
OG1
|
C:THR705
|
3.4
|
48.5
|
1.0
|
O
|
C:ASN701
|
3.9
|
49.2
|
1.0
|
C
|
C:ASN701
|
4.0
|
48.0
|
1.0
|
N
|
C:ILE702
|
4.1
|
47.0
|
1.0
|
CA
|
C:ILE702
|
4.1
|
48.1
|
1.0
|
CG1
|
C:ILE702
|
4.3
|
48.8
|
1.0
|
O
|
C:HOH1649
|
4.3
|
60.4
|
1.0
|
CB
|
C:THR705
|
4.4
|
49.5
|
1.0
|
CB
|
C:ASN701
|
4.4
|
51.0
|
1.0
|
CB
|
C:PRO672
|
4.7
|
49.3
|
1.0
|
CA
|
C:ASN701
|
4.8
|
49.8
|
1.0
|
CB
|
C:ILE702
|
4.8
|
48.9
|
1.0
|
CG2
|
C:THR705
|
4.9
|
48.7
|
1.0
|
CA
|
C:PRO672
|
4.9
|
49.9
|
1.0
|
|
Reference:
Q.Sun,
Y.Lei.
F1 in Complex with CRM1-Ran-RANBP1 To Be Published.
Page generated: Tue Jul 30 10:21:59 2024
|