Chlorine in PDB 8hql: Crystal Structure of Mouse SNX25 Px Domain
Protein crystallography data
The structure of Crystal Structure of Mouse SNX25 Px Domain, PDB code: 8hql
was solved by
Z.Yu,
J.Xu,
J.Liu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.00 /
2.40
|
Space group
|
P 61 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
92.68,
92.68,
449.521,
90,
90,
120
|
R / Rfree (%)
|
19.9 /
24.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Mouse SNX25 Px Domain
(pdb code 8hql). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Mouse SNX25 Px Domain, PDB code: 8hql:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 8hql
Go back to
Chlorine Binding Sites List in 8hql
Chlorine binding site 1 out
of 5 in the Crystal Structure of Mouse SNX25 Px Domain
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl710
b:94.4
occ:1.00
|
C
|
A:LYS584
|
3.0
|
65.8
|
1.0
|
O
|
A:LYS584
|
3.1
|
81.5
|
1.0
|
N
|
A:SER585
|
3.3
|
58.6
|
1.0
|
N
|
A:LYS584
|
3.3
|
71.0
|
1.0
|
CA
|
A:LYS584
|
3.6
|
66.4
|
1.0
|
O
|
A:LEU581
|
3.8
|
100.9
|
1.0
|
CA
|
A:SER585
|
3.8
|
56.7
|
1.0
|
CB
|
A:LYS584
|
4.1
|
74.0
|
1.0
|
N
|
A:PHE583
|
4.2
|
74.7
|
1.0
|
C
|
A:PHE583
|
4.3
|
78.7
|
1.0
|
CB
|
A:SER585
|
4.5
|
53.4
|
1.0
|
CA
|
A:PHE583
|
4.6
|
78.0
|
1.0
|
C
|
A:PRO582
|
4.7
|
88.4
|
1.0
|
O
|
A:SER579
|
4.7
|
84.2
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 8hql
Go back to
Chlorine Binding Sites List in 8hql
Chlorine binding site 2 out
of 5 in the Crystal Structure of Mouse SNX25 Px Domain
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl707
b:100.6
occ:1.00
|
CG
|
B:ARG552
|
3.3
|
51.6
|
1.0
|
CD
|
B:ARG552
|
3.4
|
66.4
|
1.0
|
NH1
|
B:ARG552
|
3.5
|
74.8
|
1.0
|
O
|
B:HOH803
|
3.7
|
46.9
|
1.0
|
CG1
|
A:VAL542
|
3.8
|
65.1
|
1.0
|
SG
|
B:CYS529
|
3.8
|
53.9
|
1.0
|
CG2
|
B:THR520
|
4.0
|
55.7
|
1.0
|
NE
|
B:ARG552
|
4.3
|
76.0
|
1.0
|
CZ
|
B:ARG552
|
4.4
|
84.6
|
1.0
|
CB
|
A:VAL542
|
4.4
|
60.8
|
1.0
|
OG1
|
B:THR520
|
4.6
|
79.8
|
1.0
|
CB
|
B:THR520
|
4.8
|
60.8
|
1.0
|
CB
|
B:ARG552
|
4.8
|
45.7
|
1.0
|
O
|
A:VAL542
|
4.8
|
56.2
|
1.0
|
CB
|
B:CYS529
|
4.9
|
55.2
|
1.0
|
OE1
|
B:GLU555
|
4.9
|
35.7
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 8hql
Go back to
Chlorine Binding Sites List in 8hql
Chlorine binding site 3 out
of 5 in the Crystal Structure of Mouse SNX25 Px Domain
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl707
b:89.8
occ:1.00
|
C24
|
E:1PE701
|
3.2
|
86.0
|
1.0
|
C23
|
E:1PE701
|
3.3
|
85.2
|
1.0
|
C14
|
C:1PE701
|
3.3
|
84.4
|
1.0
|
C25
|
C:1PE701
|
3.5
|
79.4
|
1.0
|
OH4
|
E:1PE701
|
3.5
|
83.9
|
1.0
|
C24
|
C:1PE701
|
3.7
|
76.5
|
1.0
|
OH5
|
C:1PE701
|
3.7
|
82.6
|
1.0
|
C13
|
E:1PE701
|
4.0
|
76.5
|
1.0
|
O
|
C:ASN546
|
4.0
|
35.0
|
1.0
|
O
|
E:ASN546
|
4.1
|
32.3
|
1.0
|
CB
|
C:ASN546
|
4.3
|
39.4
|
1.0
|
CB
|
E:ASN546
|
4.4
|
34.9
|
1.0
|
OH3
|
E:1PE701
|
4.4
|
85.1
|
1.0
|
C
|
C:ASN546
|
4.4
|
38.3
|
1.0
|
C
|
E:ASN546
|
4.6
|
38.1
|
1.0
|
O
|
E:HOH804
|
4.6
|
36.8
|
1.0
|
C14
|
E:1PE701
|
4.7
|
80.0
|
1.0
|
CA
|
C:TRP547
|
4.7
|
35.3
|
1.0
|
O
|
C:HOH804
|
4.7
|
32.7
|
1.0
|
N
|
C:TRP547
|
4.8
|
35.1
|
1.0
|
C15
|
C:1PE701
|
4.8
|
77.7
|
1.0
|
CA
|
E:TRP547
|
4.9
|
37.5
|
1.0
|
N
|
E:TRP547
|
4.9
|
39.9
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 8hql
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Chlorine Binding Sites List in 8hql
Chlorine binding site 4 out
of 5 in the Crystal Structure of Mouse SNX25 Px Domain
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl706
b:103.9
occ:0.50
|
OH4
|
D:1PE701
|
3.3
|
62.1
|
1.0
|
C23
|
D:1PE701
|
4.1
|
65.7
|
1.0
|
O
|
D:ASN546
|
4.1
|
31.6
|
1.0
|
C13
|
D:1PE701
|
4.1
|
70.0
|
1.0
|
CB
|
D:ASN546
|
4.3
|
33.9
|
1.0
|
C
|
D:ASN546
|
4.5
|
31.9
|
1.0
|
O
|
D:HOH806
|
4.7
|
30.8
|
1.0
|
CA
|
D:TRP547
|
4.8
|
28.1
|
1.0
|
N
|
D:TRP547
|
4.8
|
28.8
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 8hql
Go back to
Chlorine Binding Sites List in 8hql
Chlorine binding site 5 out
of 5 in the Crystal Structure of Mouse SNX25 Px Domain
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Mouse SNX25 Px Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl706
b:89.1
occ:1.00
|
O
|
E:PHE583
|
2.6
|
64.4
|
1.0
|
OG
|
E:SER579
|
2.7
|
87.6
|
1.0
|
CA
|
E:LYS584
|
3.2
|
114.0
|
1.0
|
C
|
E:PHE583
|
3.3
|
99.2
|
1.0
|
N
|
E:LYS584
|
3.5
|
107.9
|
1.0
|
O
|
E:LEU581
|
3.8
|
94.9
|
1.0
|
CB
|
E:LYS584
|
3.8
|
101.8
|
1.0
|
O
|
E:PRO582
|
3.9
|
94.1
|
1.0
|
CB
|
E:SER579
|
4.0
|
86.6
|
1.0
|
C
|
E:LYS584
|
4.3
|
107.7
|
1.0
|
C
|
E:LEU581
|
4.4
|
97.5
|
1.0
|
C
|
E:PRO582
|
4.5
|
119.6
|
1.0
|
N
|
E:SER585
|
4.6
|
77.9
|
1.0
|
CB
|
E:LEU581
|
4.6
|
93.6
|
1.0
|
CA
|
E:PHE583
|
4.6
|
89.1
|
1.0
|
N
|
E:PHE583
|
4.9
|
108.0
|
1.0
|
CA
|
E:LEU581
|
4.9
|
99.9
|
1.0
|
N
|
E:LEU581
|
4.9
|
91.9
|
1.0
|
|
Reference:
Z.Yu,
J.Xu,
J.Liu.
Crystal Structure of Mouse SNX25 Px Domain To Be Published.
Page generated: Tue Jul 30 10:22:09 2024
|