Chlorine in PDB 8ijx: Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-18

The structure of Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-18 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Fluorine	(F)	3 atoms

The binding sites of Chlorine atom in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-18 (pdb code 8ijx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-18, PDB code: 8ijx:

Chlorine binding site 1 out of 1 in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-18


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-18 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1106 b:56.1 occ:1.00 CL1 A:PZ01106 0.0 56.1 1.0 C11 A:PZ01106 1.7 40.8 1.0 C12 A:PZ01106 2.7 34.2 1.0 C10 A:PZ01106 2.7 35.8 1.0 O A:LEU811 2.9 39.1 1.0 N A:CYS813 3.3 31.5 1.0 C A:GLY812 3.4 28.0 1.0 CA A:GLY812 3.6 11.1 1.0 C A:LEU811 3.8 29.1 1.0 O A:HOH1250 3.9 35.3 1.0 O A:HOH1377 3.9 43.5 1.0 CA A:CYS813 3.9 36.3 1.0 C09 A:PZ01106 4.0 44.8 1.0 C13 A:PZ01106 4.0 33.8 1.0 O A:GLY812 4.0 28.2 1.0 CD1 A:ILE816 4.1 23.6 1.0 CD2 A:LEU809 4.1 33.8 1.0 N A:GLY812 4.1 17.3 1.0 CB A:CYS813 4.4 34.2 1.0 CD1 A:LEU809 4.5 16.8 1.0 C08 A:PZ01106 4.5 44.4 1.0 CG A:LEU809 4.7 25.6 1.0 CD1 A:TYR799 4.7 28.9 1.0 CG1 A:ILE816 5.0 31.5 1.0

K.Abe, S.Yokoshima, A.Yoshimori. Deep Learning Driven De Novo Drug Design Based on Gastric Proton Pump Structures To Be Published.