Chlorine in PDB 8irf: Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay

Enzymatic activity of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay

All present enzymatic activity of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay:
1.10.3.9;

Protein crystallography data

The structure of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay, PDB code: 8irf was solved by H.Li, M.Suga, J.R.Shen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 125.77, 231.76, 288.58, 90, 90, 90
R / Rfree (%) 13.7 / 17.3

Other elements in 8irf:

The structure of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay also contains other interesting chemical elements:

Manganese (Mn) 16 atoms
Calcium (Ca) 11 atoms
Magnesium (Mg) 80 atoms
Iron (Fe) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay (pdb code 8irf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay, PDB code: 8irf:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Chlorine binding site 1 out of 8 in 8irf

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Chlorine binding site 1 out of 8 in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:44.2
occ:0.49
 CL A:CL402 0.0 44.2 0.5
CL A:CL402 0.1 44.2 0.5
O D:HOH550 2.9 41.3 0.5
NZ D:LYS317 3.0 42.4 0.5
O D:HOH550 3.1 41.5 0.5
NZ D:LYS317 3.1 42.4 0.5
O A:HOH543 3.3 45.5 0.5
N A:GLU333 3.3 38.4 0.5
ND2 A:ASN181 3.3 41.7 0.5
O A:HOH543 3.4 45.4 0.5
ND2 A:ASN181 3.4 41.9 0.5
N A:GLU333 3.4 38.6 0.5
CE D:LYS317 3.6 44.1 0.5
CE D:LYS317 3.8 44.1 0.5
CA A:HIS332 3.8 40.7 0.5
CB A:HIS332 3.8 43.3 0.5
CA A:HIS332 3.9 41.0 0.5
CG A:GLU333 3.9 42.8 0.5
CB A:HIS332 4.0 43.1 0.5
CG A:GLU333 4.0 42.8 0.5
O D:HOH511 4.0 44.0 0.5
C A:HIS332 4.0 42.3 0.5
OD1 A:ASN181 4.1 43.5 0.5
O D:HOH511 4.1 43.8 0.5
C A:HIS332 4.2 42.3 0.5
CG A:ASN181 4.2 46.4 0.5
CG A:ASN181 4.2 46.5 0.5
OD1 A:ASN181 4.2 43.5 0.5
CA A:GLU333 4.3 44.9 0.5
CA A:GLU333 4.3 44.8 0.5
CG2 A:VAL185 4.3 39.0 0.5
CG2 A:VAL185 4.4 39.0 0.5
CD1 D:LEU321 4.4 41.6 0.5
O A:HOH578 4.4 49.1 0.5
CD1 D:LEU321 4.4 41.6 0.5
O A:HOH578 4.4 49.0 0.5
CB D:LYS317 4.5 41.8 0.5
CB D:LYS317 4.5 41.8 0.5
CD2 D:LEU321 4.5 38.5 0.5
CD2 D:LEU321 4.6 38.2 0.5
CB A:GLU333 4.7 43.8 0.5
CG D:LEU321 4.7 44.0 0.5
CG D:LYS317 4.8 43.8 0.5
CG D:LEU321 4.8 43.9 0.5
CG A:HIS332 4.8 45.8 0.5
CB A:GLU333 4.8 43.7 0.5
CG D:LYS317 4.8 43.8 0.5
CD D:LYS317 4.8 45.5 0.5
O D:LYS317 4.9 43.0 0.5
CD D:LYS317 4.9 45.3 0.5
CD A:GLU333 4.9 46.0 0.5
O D:LYS317 4.9 42.9 0.5
OE2 A:GLU333 5.0 48.0 0.5
OE2 A:GLU333 5.0 48.1 0.5
CG A:HIS332 5.0 45.9 0.5
CD A:GLU333 5.0 46.0 0.5
CD2 A:HIS332 5.0 41.8 0.5

Chlorine binding site 2 out of 8 in 8irf

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Chlorine binding site 2 out of 8 in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:44.2
occ:0.51
 CL A:CL402 0.0 44.2 0.5
CL A:CL402 0.1 44.2 0.5
O D:HOH550 3.0 41.3 0.5
O D:HOH550 3.1 41.5 0.5
NZ D:LYS317 3.1 42.4 0.5
NZ D:LYS317 3.2 42.4 0.5
O A:HOH543 3.2 45.5 0.5
ND2 A:ASN181 3.3 41.7 0.5
O A:HOH543 3.3 45.4 0.5
N A:GLU333 3.3 38.4 0.5
ND2 A:ASN181 3.4 41.9 0.5
N A:GLU333 3.4 38.6 0.5
CB A:HIS332 3.7 43.3 0.5
CE D:LYS317 3.7 44.1 0.5
CA A:HIS332 3.7 40.7 0.5
CA A:HIS332 3.8 41.0 0.5
CE D:LYS317 3.9 44.1 0.5
CB A:HIS332 3.9 43.1 0.5
CG A:GLU333 3.9 42.8 0.5
C A:HIS332 4.0 42.3 0.5
CG A:GLU333 4.0 42.8 0.5
OD1 A:ASN181 4.1 43.5 0.5
O D:HOH511 4.1 44.0 0.5
C A:HIS332 4.1 42.3 0.5
CG A:ASN181 4.2 46.4 0.5
OD1 A:ASN181 4.2 43.5 0.5
CG A:ASN181 4.2 46.5 0.5
O D:HOH511 4.2 43.8 0.5
CG2 A:VAL185 4.2 39.0 0.5
CG2 A:VAL185 4.3 39.0 0.5
CA A:GLU333 4.3 44.9 0.5
CD1 D:LEU321 4.3 41.6 0.5
CA A:GLU333 4.3 44.8 0.5
CD1 D:LEU321 4.4 41.6 0.5
CD2 D:LEU321 4.4 38.5 0.5
O A:HOH578 4.4 49.1 0.5
O A:HOH578 4.5 49.0 0.5
CD2 D:LEU321 4.5 38.2 0.5
CB D:LYS317 4.5 41.8 0.5
CB D:LYS317 4.6 41.8 0.5
CG D:LEU321 4.7 44.0 0.5
CG A:HIS332 4.7 45.8 0.5
CB A:GLU333 4.7 43.8 0.5
CG D:LEU321 4.7 43.9 0.5
CB A:GLU333 4.8 43.7 0.5
CG D:LYS317 4.8 43.8 0.5
CG D:LYS317 4.9 43.8 0.5
CG A:HIS332 4.9 45.9 0.5
CD D:LYS317 4.9 45.5 0.5
CD A:GLU333 4.9 46.0 0.5
O D:LYS317 4.9 43.0 0.5
CD2 A:HIS332 4.9 41.8 0.5
OE2 A:GLU333 4.9 48.1 0.5
OE2 A:GLU333 4.9 48.0 0.5
O D:LYS317 5.0 42.9 0.5
CD A:GLU333 5.0 46.0 0.5

Chlorine binding site 3 out of 8 in 8irf

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Chlorine binding site 3 out of 8 in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:47.9
occ:0.49
 CL A:CL403 0.0 47.9 0.5
CL A:CL403 0.2 47.1 0.5
O C:HOH706 2.9 43.6 0.5
N A:ASN338 3.0 46.1 0.5
O C:HOH706 3.1 44.4 0.5
N A:ASN338 3.1 46.4 0.5
O A:HOH592 3.2 50.2 0.5
O A:HOH592 3.3 47.0 0.5
N C:GLU354 3.3 45.8 0.5
N C:GLU354 3.3 45.9 0.5
N A:PHE339 3.6 48.4 0.5
N A:PHE339 3.7 48.3 0.5
CA A:HIS337 3.7 47.6 0.5
CA A:HIS337 3.7 47.6 0.5
CA C:GLY353 3.8 45.2 0.5
CA C:GLY353 3.8 45.3 0.5
C A:HIS337 3.8 50.9 0.5
CD2 A:PHE339 3.8 47.3 0.5
CD2 A:PHE339 3.9 47.7 0.5
C A:HIS337 3.9 50.9 0.5
CA A:ASN338 4.0 49.5 0.5
C C:GLY353 4.0 49.5 0.5
C C:GLY353 4.1 49.5 0.5
CA A:ASN338 4.1 49.4 0.5
CB C:GLU354 4.1 43.1 0.5
O A:ALA336 4.2 46.5 0.5
CB C:GLU354 4.2 43.1 0.5
CB A:ASN338 4.2 45.0 0.5
CB A:HIS337 4.2 40.2 0.5
O A:ALA336 4.2 46.5 0.5
CA C:GLU354 4.3 44.9 0.5
C A:ASN338 4.3 50.3 0.5
CB A:PHE339 4.3 46.5 0.5
CB A:HIS337 4.3 40.1 0.5
CA C:GLU354 4.3 45.1 0.5
C A:ASN338 4.3 50.3 0.5
CB A:ASN338 4.4 44.8 0.5
O C:HOH695 4.4 44.2 0.5
CG A:PHE339 4.4 50.7 0.5
O C:HOH695 4.5 44.2 0.5
CA A:PHE339 4.5 47.3 0.5
CG A:PHE339 4.5 50.5 0.5
CB A:PHE339 4.5 46.3 0.5
O A:PHE339 4.5 45.4 0.5
O C:HOH740 4.5 51.3 0.5
CE2 A:PHE339 4.6 48.9 0.5
O A:PHE339 4.6 45.6 0.5
CA A:PHE339 4.6 47.3 0.5
O C:HOH740 4.7 51.7 0.5
CE2 A:PHE339 4.7 48.6 0.5
N C:THR355 4.8 43.1 0.5
N A:HIS337 4.8 42.8 0.5
N A:HIS337 4.8 42.8 0.5
N C:THR355 4.8 43.1 0.5
CD2 A:HIS337 4.8 46.2 0.5
O C:GLY352 4.8 45.6 0.5
CD2 A:HIS337 4.9 46.1 0.5
CG A:ASN338 4.9 50.2 0.5
CG A:HIS337 4.9 45.4 0.5
C A:ALA336 4.9 44.8 0.5
C A:PHE339 5.0 47.3 0.5
NE2 C:GLN313 5.0 44.5 0.5
CG A:ASN338 5.0 50.2 0.5
CG A:HIS337 5.0 45.4 0.5
C A:ALA336 5.0 44.8 0.5
O C:GLY352 5.0 45.9 0.5
N C:GLY353 5.0 45.2 0.5

Chlorine binding site 4 out of 8 in 8irf

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Chlorine binding site 4 out of 8 in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:47.1
occ:0.51
 CL A:CL403 0.0 47.1 0.5
CL A:CL403 0.2 47.9 0.5
O C:HOH706 2.9 43.6 0.5
O A:HOH592 3.0 50.2 0.5
O C:HOH706 3.1 44.4 0.5
O A:HOH592 3.1 47.0 0.5
N A:ASN338 3.1 46.1 0.5
N A:ASN338 3.3 46.4 0.5
N C:GLU354 3.3 45.8 0.5
N C:GLU354 3.3 45.9 0.5
N A:PHE339 3.7 48.4 0.5
CA A:HIS337 3.7 47.6 0.5
CA A:HIS337 3.7 47.6 0.5
N A:PHE339 3.7 48.3 0.5
CA C:GLY353 3.9 45.2 0.5
C A:HIS337 3.9 50.9 0.5
CD2 A:PHE339 3.9 47.3 0.5
CA C:GLY353 3.9 45.3 0.5
CD2 A:PHE339 3.9 47.7 0.5
C A:HIS337 4.0 50.9 0.5
CB C:GLU354 4.0 43.1 0.5
C C:GLY353 4.1 49.5 0.5
CA A:ASN338 4.1 49.5 0.5
CB C:GLU354 4.1 43.1 0.5
C C:GLY353 4.1 49.5 0.5
CB A:HIS337 4.2 40.2 0.5
O A:ALA336 4.2 46.5 0.5
CA C:GLU354 4.2 44.9 0.5
CA A:ASN338 4.2 49.4 0.5
O A:ALA336 4.3 46.5 0.5
CB A:HIS337 4.3 40.1 0.5
CA C:GLU354 4.3 45.1 0.5
CB A:PHE339 4.3 46.5 0.5
O C:HOH695 4.3 44.2 0.5
CB A:ASN338 4.4 45.0 0.5
O C:HOH740 4.4 51.3 0.5
C A:ASN338 4.4 50.3 0.5
O C:HOH695 4.4 44.2 0.5
C A:ASN338 4.4 50.3 0.5
O A:PHE339 4.5 45.4 0.5
O C:HOH740 4.5 51.7 0.5
CG A:PHE339 4.5 50.7 0.5
CA A:PHE339 4.5 47.3 0.5
CB A:ASN338 4.5 44.8 0.5
CB A:PHE339 4.5 46.3 0.5
O A:PHE339 4.5 45.6 0.5
CG A:PHE339 4.6 50.5 0.5
CA A:PHE339 4.6 47.3 0.5
CE2 A:PHE339 4.7 48.9 0.5
N C:THR355 4.7 43.1 0.5
CD2 A:HIS337 4.7 46.2 0.5
CD2 A:HIS337 4.8 46.1 0.5
CE2 A:PHE339 4.8 48.6 0.5
N C:THR355 4.8 43.1 0.5
N A:HIS337 4.8 42.8 0.5
CG A:HIS337 4.8 45.4 0.5
N A:HIS337 4.9 42.8 0.5
NE2 C:GLN313 4.9 44.5 0.5
O C:HOH622 4.9 48.8 0.5
CG A:HIS337 4.9 45.4 0.5
O C:GLY352 4.9 45.6 0.5
C A:PHE339 4.9 47.3 0.5
C A:ALA336 5.0 44.8 0.5

Chlorine binding site 5 out of 8 in 8irf

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Chlorine binding site 5 out of 8 in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl402

b:49.2
occ:0.49
 CL a:CL402 0.0 49.2 0.5
CL a:CL402 0.1 49.1 0.5
NZ d:LYS317 3.1 45.9 0.5
O d:HOH561 3.1 50.9 0.5
NZ d:LYS317 3.1 46.0 0.5
O d:HOH561 3.2 50.7 0.5
O a:HOH564 3.3 49.3 0.5
O a:HOH564 3.3 49.3 0.5
N a:GLU333 3.3 47.6 0.5
N a:GLU333 3.4 47.6 0.5
ND2 a:ASN181 3.4 41.0 0.5
ND2 a:ASN181 3.5 41.1 0.5
CA a:HIS332 3.7 49.3 0.5
CB a:HIS332 3.7 47.0 0.5
CA a:HIS332 3.8 49.3 0.5
CE d:LYS317 3.8 47.1 0.5
CB a:HIS332 3.8 47.0 0.5
CE d:LYS317 3.8 47.1 0.5
CG a:GLU333 3.9 47.8 0.5
CG a:GLU333 4.0 47.8 0.5
C a:HIS332 4.0 46.9 0.5
C a:HIS332 4.0 46.8 0.5
OD1 a:ASN181 4.1 46.2 0.5
OD1 a:ASN181 4.1 46.1 0.5
CG2 a:VAL185 4.2 44.5 0.5
CG a:ASN181 4.2 47.9 0.5
CG2 a:VAL185 4.2 44.6 0.5
CG a:ASN181 4.2 47.8 0.5
O d:HOH531 4.3 50.3 0.5
CA a:GLU333 4.3 46.8 0.5
CA a:GLU333 4.3 46.8 0.5
O d:HOH531 4.3 50.6 0.5
O a:HOH572 4.4 49.6 0.5
CD1 d:LEU321 4.4 45.0 0.5
CD2 d:LEU321 4.4 43.4 0.5
CD2 d:LEU321 4.5 43.3 0.5
O a:HOH572 4.5 49.7 0.5
CD1 d:LEU321 4.5 44.8 0.5
CB d:LYS317 4.6 44.1 0.5
CB d:LYS317 4.6 44.1 0.5
CG a:HIS332 4.7 50.1 0.5
CB a:GLU333 4.7 49.5 0.5
CG a:HIS332 4.7 50.1 0.5
CG d:LEU321 4.7 52.1 0.5
CG d:LEU321 4.7 52.1 0.5
CB a:GLU333 4.7 49.5 0.5
CG d:LYS317 4.8 45.1 0.5
CD2 a:HIS332 4.8 47.2 0.5
CD2 a:HIS332 4.9 47.5 0.5
CD a:GLU333 4.9 51.2 0.5
CD a:GLU333 4.9 51.2 0.5
O d:LYS317 4.9 46.5 0.5
OE2 a:GLU333 4.9 52.0 0.5
CG d:LYS317 4.9 45.0 0.5
CD d:LYS317 4.9 43.7 0.5
O d:LYS317 4.9 46.4 0.5
OE2 a:GLU333 5.0 52.1 0.5
CD d:LYS317 5.0 43.7 0.5

Chlorine binding site 6 out of 8 in 8irf

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Chlorine binding site 6 out of 8 in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl402

b:49.1
occ:0.51
 CL a:CL402 0.0 49.1 0.5
CL a:CL402 0.1 49.2 0.5
O d:HOH561 3.0 50.9 0.5
NZ d:LYS317 3.1 45.9 0.5
O d:HOH561 3.1 50.7 0.5
NZ d:LYS317 3.2 46.0 0.5
ND2 a:ASN181 3.3 41.0 0.5
O a:HOH564 3.3 49.3 0.5
O a:HOH564 3.3 49.3 0.5
ND2 a:ASN181 3.4 41.1 0.5
N a:GLU333 3.4 47.6 0.5
N a:GLU333 3.5 47.6 0.5
CB a:HIS332 3.8 47.0 0.5
CE d:LYS317 3.8 47.1 0.5
CA a:HIS332 3.8 49.3 0.5
CB a:HIS332 3.8 47.0 0.5
CE d:LYS317 3.8 47.1 0.5
CA a:HIS332 3.8 49.3 0.5
CG a:GLU333 4.0 47.8 0.5
OD1 a:ASN181 4.1 46.2 0.5
CG a:GLU333 4.1 47.8 0.5
OD1 a:ASN181 4.1 46.1 0.5
C a:HIS332 4.1 46.9 0.5
C a:HIS332 4.1 46.8 0.5
CG2 a:VAL185 4.1 44.5 0.5
CG a:ASN181 4.1 47.9 0.5
CG a:ASN181 4.1 47.8 0.5
CG2 a:VAL185 4.2 44.6 0.5
O d:HOH531 4.3 50.3 0.5
CD1 d:LEU321 4.3 45.0 0.5
O d:HOH531 4.4 50.6 0.5
CA a:GLU333 4.4 46.8 0.5
CD2 d:LEU321 4.4 43.4 0.5
CA a:GLU333 4.4 46.8 0.5
CD1 d:LEU321 4.4 44.8 0.5
CD2 d:LEU321 4.4 43.3 0.5
O a:HOH572 4.4 49.6 0.5
O a:HOH572 4.5 49.7 0.5
CB d:LYS317 4.5 44.1 0.5
CB d:LYS317 4.6 44.1 0.5
CG d:LEU321 4.6 52.1 0.5
CG d:LEU321 4.6 52.1 0.5
CG a:HIS332 4.7 50.1 0.5
CG a:HIS332 4.7 50.1 0.5
CB a:GLU333 4.8 49.5 0.5
CG d:LYS317 4.8 45.1 0.5
CB a:GLU333 4.8 49.5 0.5
O d:LYS317 4.9 46.5 0.5
O d:LYS317 4.9 46.4 0.5
CD2 a:HIS332 4.9 47.2 0.5
CD2 a:HIS332 4.9 47.5 0.5
CG d:LYS317 4.9 45.0 0.5
CD d:LYS317 4.9 43.7 0.5
CD d:LYS317 5.0 43.7 0.5
CD a:GLU333 5.0 51.2 0.5
CD a:GLU333 5.0 51.2 0.5

Chlorine binding site 7 out of 8 in 8irf

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Chlorine binding site 7 out of 8 in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl403

b:53.3
occ:0.49
 CL a:CL403 0.0 53.3 0.5
CL a:CL403 0.1 52.9 0.5
O a:HOH609 2.9 52.9 0.5
O c:HOH671 3.0 50.8 0.5
O c:HOH671 3.0 50.8 0.5
O a:HOH609 3.2 52.6 0.5
N a:ASN338 3.2 51.5 0.5
N a:ASN338 3.2 51.5 0.5
N c:GLU354 3.4 50.1 0.5
N c:GLU354 3.5 50.0 0.5
N a:PHE339 3.6 52.2 0.5
CA a:HIS337 3.6 47.9 0.5
N a:PHE339 3.6 52.2 0.5
CD2 a:PHE339 3.6 54.6 0.5
CA a:HIS337 3.6 48.1 0.5
CD2 a:PHE339 3.7 54.7 0.5
C a:HIS337 3.9 50.5 0.5
CA c:GLY353 3.9 48.4 0.5
CA c:GLY353 3.9 48.6 0.5
C a:HIS337 3.9 50.5 0.5
CB a:HIS337 4.1 44.5 0.5
CA a:ASN338 4.1 52.2 0.5
C c:GLY353 4.1 55.5 0.5
CB a:HIS337 4.1 45.0 0.5
CA a:ASN338 4.1 52.1 0.5
O a:ALA336 4.2 57.5 0.5
CB a:PHE339 4.2 50.1 0.5
C c:GLY353 4.2 55.4 0.5
CB c:GLU354 4.2 50.2 0.5
CG a:PHE339 4.2 54.2 0.5
O a:ALA336 4.2 57.5 0.5
C a:ASN338 4.3 52.4 0.5
CB a:PHE339 4.3 50.2 0.5
CB c:GLU354 4.3 50.3 0.5
C a:ASN338 4.4 52.4 0.5
O c:HOH681 4.4 50.0 0.5
CA c:GLU354 4.4 50.0 0.5
CG a:PHE339 4.4 54.2 0.5
CA a:PHE339 4.4 56.9 0.5
CE2 a:PHE339 4.4 56.1 0.5
CB a:ASN338 4.4 53.1 0.5
CB a:ASN338 4.4 53.0 0.5
O c:HOH681 4.4 50.2 0.5
O a:PHE339 4.5 52.2 0.5
CA a:PHE339 4.5 57.1 0.5
CE2 a:PHE339 4.5 56.0 0.5
CA c:GLU354 4.5 50.0 0.5
O a:PHE339 4.5 51.8 0.5
O c:HOH732 4.6 55.1 0.5
O c:HOH732 4.6 55.6 0.5
N a:HIS337 4.8 48.6 0.5
N a:HIS337 4.8 48.7 0.5
CG a:HIS337 4.9 50.8 0.5
CD2 a:HIS337 4.9 50.5 0.5
C a:PHE339 4.9 53.6 0.5
CG a:HIS337 4.9 51.0 0.5
N c:THR355 4.9 47.9 0.5
C a:ALA336 4.9 53.9 0.5
N c:THR355 4.9 47.8 0.5
O c:GLY352 4.9 50.5 0.5
C a:PHE339 5.0 53.6 0.5
C a:ALA336 5.0 53.9 0.5
CG a:ASN338 5.0 54.5 0.5
CD2 a:HIS337 5.0 50.3 0.5
NE2 c:GLN313 5.0 51.0 0.5
CG c:GLU354 5.0 50.4 0.5
NE2 c:GLN313 5.0 51.1 0.5

Chlorine binding site 8 out of 8 in 8irf

Go back to Chlorine Binding Sites List in 8irf
Chlorine binding site 8 out of 8 in the Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Xfel Structure of Cyanobacterial Photosystem II Following Two Flashes (2F) with A 1-Microsecond Delay within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl403

b:52.9
occ:0.51
 CL a:CL403 0.0 52.9 0.5
CL a:CL403 0.1 53.3 0.5
O a:HOH609 2.8 52.9 0.5
O a:HOH609 3.0 52.6 0.5
O c:HOH671 3.1 50.8 0.5
O c:HOH671 3.1 50.8 0.5
N a:ASN338 3.2 51.5 0.5
N a:ASN338 3.2 51.5 0.5
N c:GLU354 3.4 50.1 0.5
N c:GLU354 3.5 50.0 0.5
CA a:HIS337 3.5 47.9 0.5
CA a:HIS337 3.6 48.1 0.5
N a:PHE339 3.6 52.2 0.5
N a:PHE339 3.6 52.2 0.5
CD2 a:PHE339 3.7 54.6 0.5
C a:HIS337 3.8 50.5 0.5
CD2 a:PHE339 3.8 54.7 0.5
C a:HIS337 3.9 50.5 0.5
CA c:GLY353 3.9 48.4 0.5
CA c:GLY353 3.9 48.6 0.5
CB a:HIS337 4.0 44.5 0.5
CB a:HIS337 4.0 45.0 0.5
O a:ALA336 4.1 57.5 0.5
CB c:GLU354 4.1 50.2 0.5
C c:GLY353 4.1 55.5 0.5
CA a:ASN338 4.2 52.2 0.5
O a:ALA336 4.2 57.5 0.5
CA a:ASN338 4.2 52.1 0.5
C c:GLY353 4.2 55.4 0.5
CB a:PHE339 4.2 50.1 0.5
CB c:GLU354 4.3 50.3 0.5
CG a:PHE339 4.3 54.2 0.5
CA c:GLU354 4.3 50.0 0.5
C a:ASN338 4.4 52.4 0.5
CB a:PHE339 4.4 50.2 0.5
O c:HOH681 4.4 50.0 0.5
C a:ASN338 4.4 52.4 0.5
CA a:PHE339 4.4 56.9 0.5
CA c:GLU354 4.4 50.0 0.5
O a:PHE339 4.4 52.2 0.5
O c:HOH681 4.5 50.2 0.5
O c:HOH732 4.5 55.1 0.5
CB a:ASN338 4.5 53.1 0.5
CG a:PHE339 4.5 54.2 0.5
CB a:ASN338 4.5 53.0 0.5
O a:PHE339 4.5 51.8 0.5
CE2 a:PHE339 4.5 56.1 0.5
CA a:PHE339 4.5 57.1 0.5
O c:HOH732 4.5 55.6 0.5
CE2 a:PHE339 4.6 56.0 0.5
N a:HIS337 4.7 48.6 0.5
N a:HIS337 4.7 48.7 0.5
CD2 a:HIS337 4.7 50.5 0.5
CG a:HIS337 4.7 50.8 0.5
CG a:HIS337 4.8 51.0 0.5
CD2 a:HIS337 4.8 50.3 0.5
C a:ALA336 4.9 53.9 0.5
CG c:GLU354 4.9 50.4 0.5
C a:ALA336 4.9 53.9 0.5
C a:PHE339 4.9 53.6 0.5
N c:THR355 4.9 47.9 0.5
N c:THR355 4.9 47.8 0.5
C a:PHE339 5.0 53.6 0.5
NE2 c:GLN313 5.0 51.0 0.5

Reference:

H.Li, Y.Nakajima, E.Nango, S.Owada, D.Yamada, K.Hashimoto, F.Luo, R.Tanaka, F.Akita, K.Kato, J.M.Kang, Y.Saitoh, S.Kishi, H.Yu, N.Matsubara, H.Fujii, M.Sugahara, M.Suzuki, T.Masuda, T.Kimura, T.N.Thao, S.Yonekura, L.J.Yu, T.Tosha, K.Tono, Y.Joti, T.Hatsui, M.Yabashi, M.Kubo, S.Iwata, H.Isobe, K.Yamaguchi, M.Suga, J.R.Shen. Oxygen-Evolving Photosystem II Structures During S1-S2-S3 Transitions. Nature 2024.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06987-5
Page generated: Tue Jul 30 10:39:40 2024

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