Chlorine in PDB 8itc: Phosphoglycerate Mutase 1 Complexed with A Compound
Enzymatic activity of Phosphoglycerate Mutase 1 Complexed with A Compound
All present enzymatic activity of Phosphoglycerate Mutase 1 Complexed with A Compound:
5.4.2.11;
5.4.2.4;
Protein crystallography data
The structure of Phosphoglycerate Mutase 1 Complexed with A Compound, PDB code: 8itc
was solved by
L.Zhou,
L.L.Jiang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
26.70 /
1.88
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
82.388,
83.902,
103.828,
90,
90,
90
|
R / Rfree (%)
|
19.3 /
22
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Phosphoglycerate Mutase 1 Complexed with A Compound
(pdb code 8itc). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Phosphoglycerate Mutase 1 Complexed with A Compound, PDB code: 8itc:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 8itc
Go back to
Chlorine Binding Sites List in 8itc
Chlorine binding site 1 out
of 3 in the Phosphoglycerate Mutase 1 Complexed with A Compound
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Phosphoglycerate Mutase 1 Complexed with A Compound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:44.9
occ:1.00
|
NH1
|
B:ARG83
|
3.2
|
29.3
|
1.0
|
NH2
|
B:ARG83
|
3.2
|
28.7
|
1.0
|
NH2
|
C:ARG83
|
3.3
|
30.5
|
1.0
|
NH1
|
C:ARG83
|
3.3
|
30.1
|
1.0
|
NE1
|
C:TRP68
|
3.4
|
31.1
|
1.0
|
NE1
|
B:TRP68
|
3.4
|
28.2
|
1.0
|
CZ
|
B:ARG83
|
3.6
|
31.6
|
1.0
|
CZ
|
C:ARG83
|
3.8
|
30.9
|
1.0
|
CG2
|
C:VAL81
|
4.0
|
28.0
|
1.0
|
CG2
|
B:VAL81
|
4.0
|
30.2
|
1.0
|
CB
|
C:VAL81
|
4.0
|
29.8
|
1.0
|
CB
|
B:VAL81
|
4.1
|
30.5
|
1.0
|
CD1
|
C:TRP68
|
4.2
|
29.9
|
1.0
|
CE2
|
C:TRP68
|
4.3
|
30.4
|
1.0
|
CE2
|
B:TRP68
|
4.3
|
28.1
|
1.0
|
CD1
|
B:TRP68
|
4.3
|
27.8
|
1.0
|
CG1
|
B:VAL81
|
4.4
|
30.9
|
1.0
|
CG1
|
C:VAL81
|
4.4
|
30.2
|
1.0
|
CZ2
|
B:TRP68
|
4.6
|
27.5
|
1.0
|
CZ2
|
C:TRP68
|
4.6
|
29.9
|
1.0
|
NE
|
B:ARG83
|
5.0
|
31.2
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 8itc
Go back to
Chlorine Binding Sites List in 8itc
Chlorine binding site 2 out
of 3 in the Phosphoglycerate Mutase 1 Complexed with A Compound
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Phosphoglycerate Mutase 1 Complexed with A Compound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl302
b:39.4
occ:1.00
|
CL01
|
C:QA0302
|
0.0
|
39.4
|
1.0
|
C02
|
C:QA0302
|
1.8
|
38.9
|
1.0
|
C03
|
C:QA0302
|
2.7
|
34.8
|
1.0
|
C35
|
C:QA0302
|
2.7
|
42.9
|
1.0
|
H031
|
C:QA0302
|
2.8
|
41.8
|
1.0
|
H351
|
C:QA0302
|
2.9
|
51.5
|
1.0
|
CB
|
C:ALA104
|
3.8
|
29.7
|
1.0
|
C04
|
C:QA0302
|
4.0
|
39.7
|
1.0
|
C34
|
C:QA0302
|
4.0
|
44.7
|
1.0
|
N
|
C:GLU109
|
4.2
|
32.0
|
1.0
|
O
|
C:ALA104
|
4.2
|
31.3
|
1.0
|
CB
|
C:GLU109
|
4.4
|
36.7
|
1.0
|
C05
|
C:QA0302
|
4.5
|
42.7
|
1.0
|
C
|
C:ALA104
|
4.5
|
30.1
|
1.0
|
CA
|
C:GLU109
|
4.5
|
35.0
|
1.0
|
CA
|
C:ALA104
|
4.6
|
31.5
|
1.0
|
C
|
C:GLY108
|
4.8
|
34.5
|
1.0
|
H041
|
C:QA0302
|
4.8
|
47.7
|
1.0
|
H341
|
C:QA0302
|
4.9
|
53.7
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 8itc
Go back to
Chlorine Binding Sites List in 8itc
Chlorine binding site 3 out
of 3 in the Phosphoglycerate Mutase 1 Complexed with A Compound
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Phosphoglycerate Mutase 1 Complexed with A Compound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl303
b:42.1
occ:1.00
|
CL01
|
C:QA0303
|
0.0
|
42.1
|
1.0
|
C02
|
C:QA0303
|
1.8
|
37.4
|
1.0
|
C03
|
C:QA0303
|
2.7
|
39.2
|
1.0
|
C35
|
C:QA0303
|
2.7
|
37.8
|
1.0
|
H031
|
C:QA0303
|
2.8
|
47.1
|
1.0
|
H351
|
C:QA0303
|
2.9
|
45.4
|
1.0
|
NH2
|
C:ARG90
|
3.6
|
34.9
|
1.0
|
O
|
C:HOH427
|
3.7
|
39.3
|
1.0
|
CB
|
C:TRP115
|
3.7
|
35.9
|
1.0
|
CD1
|
C:LEU95
|
4.0
|
31.2
|
1.0
|
C04
|
C:QA0303
|
4.0
|
39.7
|
1.0
|
C34
|
C:QA0303
|
4.0
|
37.6
|
1.0
|
CZ
|
C:ARG90
|
4.0
|
38.2
|
1.0
|
CB
|
C:PRO123
|
4.1
|
36.8
|
1.0
|
CG
|
C:PRO123
|
4.1
|
36.6
|
1.0
|
CD1
|
C:TYR92
|
4.2
|
35.2
|
1.0
|
NH1
|
C:ARG90
|
4.3
|
32.8
|
1.0
|
O
|
C:TRP115
|
4.3
|
41.4
|
1.0
|
CG
|
C:TRP115
|
4.3
|
37.7
|
1.0
|
CD
|
C:PRO123
|
4.3
|
35.5
|
1.0
|
CE1
|
C:TYR92
|
4.5
|
29.9
|
1.0
|
C
|
C:TRP115
|
4.5
|
37.2
|
1.0
|
C05
|
C:QA0303
|
4.5
|
43.1
|
1.0
|
CA
|
C:TRP115
|
4.6
|
36.0
|
1.0
|
N
|
C:PRO123
|
4.8
|
38.2
|
1.0
|
NE
|
C:ARG90
|
4.8
|
35.5
|
1.0
|
H041
|
C:QA0303
|
4.8
|
47.7
|
1.0
|
CD2
|
C:TRP115
|
4.9
|
35.2
|
1.0
|
H341
|
C:QA0303
|
4.9
|
45.2
|
1.0
|
CA
|
C:PRO123
|
4.9
|
36.2
|
1.0
|
|
Reference:
L.Zhou,
L.L.Jiang.
Phosphoglycerate Mutase 1 Complexed with A Compound To Be Published.
Page generated: Tue Jul 30 10:48:59 2024
|