Chlorine in PDB 8j8d: Crystal Structure of Srcr Domain 11 of DMBT1

Protein crystallography data

The structure of Crystal Structure of Srcr Domain 11 of DMBT1, PDB code: 8j8d was solved by C.Zhang, P.Lu, K.Nagata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.90 / 1.51
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.802, 31.705, 35.219, 90, 90, 90
R / Rfree (%) 13.8 / 17.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Srcr Domain 11 of DMBT1 (pdb code 8j8d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Srcr Domain 11 of DMBT1, PDB code: 8j8d:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8j8d

Go back to Chlorine Binding Sites List in 8j8d
Chlorine binding site 1 out of 2 in the Crystal Structure of Srcr Domain 11 of DMBT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Srcr Domain 11 of DMBT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:18.4
occ:1.00
NH1 A:ARG18 3.3 13.9 1.0
O A:HOH364 3.7 14.0 1.0
O A:HOH444 3.7 29.1 1.0
CG A:ARG18 3.8 14.4 1.0
O A:HOH335 3.8 24.0 1.0
CD A:ARG18 3.8 13.7 1.0
CD2 A:LEU51 4.2 12.5 1.0
O A:HOH452 4.2 16.6 1.0
CZ A:ARG18 4.4 11.0 1.0
NE A:ARG18 4.6 15.2 1.0

Chlorine binding site 2 out of 2 in 8j8d

Go back to Chlorine Binding Sites List in 8j8d
Chlorine binding site 2 out of 2 in the Crystal Structure of Srcr Domain 11 of DMBT1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Srcr Domain 11 of DMBT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:26.4
occ:1.00
O A:HOH350 3.2 14.7 1.0
N A:ARG28 3.5 11.6 1.0
O A:HOH454 3.5 25.8 1.0
O A:HOH437 3.5 45.8 1.0
O A:HOH445 3.6 33.9 1.0
CD1 A:TYR27 3.9 10.7 1.0
O A:HOH396 3.9 27.7 1.0
CE1 A:TYR27 4.1 12.7 1.0
CA A:ARG28 4.2 13.7 1.0
CG A:ARG28 4.3 15.0 1.0
O A:HOH361 4.3 16.6 1.0
CA A:TYR27 4.4 9.7 1.0
CD2 A:LEU8 4.4 13.9 1.0
C A:TYR27 4.4 10.5 1.0
CG A:TYR27 4.7 10.9 1.0
CG A:LEU8 4.8 11.9 1.0
CB A:ARG28 4.8 14.2 1.0

Reference:

C.Zhang, P.Lu, K.Nagata. Crystal Structure of Srcr Domain 11 of DMBT1 To Be Published.
Page generated: Tue Jul 30 10:56:54 2024

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