Chlorine in PDB 8je7: Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Protein crystallography data
The structure of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95), PDB code: 8je7
was solved by
R.Goswami,
Y.Manickam,
J.Chhibber-Goel,
K.Harlos,
A.Sharma,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
83.81 /
2.14
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.675,
113.712,
123.999,
90,
90,
90
|
R / Rfree (%)
|
18 /
22.8
|
Other elements in 8je7:
The structure of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
(pdb code 8je7). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95), PDB code: 8je7:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 8je7
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Chlorine Binding Sites List in 8je7
Chlorine binding site 1 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1801
b:52.3
occ:0.93
|
CL1
|
A:HFG1801
|
0.0
|
52.3
|
0.9
|
C6
|
A:HFG1801
|
1.7
|
59.6
|
0.9
|
C5
|
A:HFG1801
|
2.7
|
50.3
|
0.9
|
C7
|
A:HFG1801
|
2.7
|
83.9
|
0.9
|
BR1
|
A:HFG1801
|
3.3
|
145.8
|
0.9
|
CG
|
A:PRO1327
|
3.6
|
40.3
|
1.0
|
CB
|
A:PRO1306
|
3.7
|
88.2
|
1.0
|
CG1
|
A:VAL1308
|
3.8
|
72.7
|
1.0
|
C10
|
A:HFG1801
|
4.0
|
50.1
|
0.9
|
C8
|
A:HFG1801
|
4.0
|
52.3
|
0.9
|
O
|
A:HOH1991
|
4.1
|
57.8
|
1.0
|
O
|
A:HOH2036
|
4.1
|
72.5
|
1.0
|
CG
|
A:PRO1306
|
4.3
|
90.5
|
1.0
|
CB
|
A:PRO1327
|
4.5
|
36.5
|
1.0
|
C9
|
A:HFG1801
|
4.5
|
47.8
|
0.9
|
CD
|
A:PRO1327
|
4.8
|
37.5
|
1.0
|
CD1
|
A:LEU1294
|
4.8
|
61.2
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 8je7
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Chlorine Binding Sites List in 8je7
Chlorine binding site 2 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1807
b:70.3
occ:0.95
|
ND1
|
A:HIS1258
|
3.0
|
61.6
|
0.4
|
ND1
|
A:HIS1258
|
3.1
|
62.1
|
0.6
|
N
|
A:HIS1258
|
3.6
|
39.4
|
1.0
|
CE1
|
A:HIS1258
|
3.6
|
63.1
|
0.4
|
NE
|
A:ARG1257
|
3.6
|
52.7
|
1.0
|
O
|
A:HOH1989
|
3.6
|
42.1
|
1.0
|
CB
|
A:ARG1257
|
3.6
|
35.5
|
1.0
|
CE1
|
A:HIS1258
|
3.8
|
63.3
|
0.6
|
CG
|
A:HIS1258
|
4.0
|
58.4
|
0.4
|
CA
|
A:ARG1257
|
4.0
|
38.0
|
1.0
|
CG
|
A:HIS1258
|
4.0
|
58.8
|
0.6
|
CD2
|
B:LEU1351
|
4.1
|
33.6
|
1.0
|
CH2
|
B:TRP1340
|
4.2
|
46.2
|
1.0
|
CD1
|
B:LEU1351
|
4.2
|
38.0
|
1.0
|
CZ3
|
B:TRP1340
|
4.2
|
44.8
|
1.0
|
CG
|
A:ARG1257
|
4.2
|
39.8
|
1.0
|
NH2
|
A:ARG1257
|
4.2
|
56.2
|
1.0
|
CB
|
A:HIS1258
|
4.3
|
49.8
|
0.6
|
C
|
A:ARG1257
|
4.3
|
44.8
|
1.0
|
CB
|
A:HIS1258
|
4.4
|
49.9
|
0.4
|
CZ
|
A:ARG1257
|
4.4
|
52.0
|
1.0
|
CD
|
A:ARG1257
|
4.5
|
46.2
|
1.0
|
CZ2
|
B:TRP1340
|
4.6
|
42.5
|
1.0
|
CA
|
A:HIS1258
|
4.6
|
43.9
|
0.6
|
CA
|
A:HIS1258
|
4.6
|
43.9
|
0.4
|
CE3
|
B:TRP1340
|
4.6
|
46.6
|
1.0
|
NE2
|
A:HIS1258
|
4.7
|
61.9
|
0.4
|
CG
|
B:LEU1351
|
4.7
|
36.9
|
1.0
|
CD2
|
A:HIS1258
|
4.9
|
61.4
|
0.4
|
NE2
|
A:HIS1258
|
5.0
|
61.6
|
0.6
|
|
Chlorine binding site 3 out
of 6 in 8je7
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Chlorine Binding Sites List in 8je7
Chlorine binding site 3 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1801
b:44.7
occ:0.87
|
CL1
|
B:HFG1801
|
0.0
|
44.7
|
0.9
|
C6
|
B:HFG1801
|
1.7
|
39.4
|
0.9
|
C5
|
B:HFG1801
|
2.7
|
37.7
|
0.9
|
C7
|
B:HFG1801
|
2.7
|
63.8
|
0.9
|
BR1
|
B:HFG1801
|
3.3
|
128.6
|
0.9
|
CG
|
B:PRO1327
|
3.6
|
36.6
|
1.0
|
CB
|
B:PRO1306
|
3.6
|
72.8
|
1.0
|
O
|
B:HOH2093
|
3.8
|
46.4
|
1.0
|
C10
|
B:HFG1801
|
4.0
|
37.6
|
0.9
|
C8
|
B:HFG1801
|
4.0
|
42.8
|
0.9
|
CG1
|
B:VAL1308
|
4.2
|
50.8
|
1.0
|
CG
|
B:PRO1306
|
4.4
|
71.8
|
1.0
|
CB
|
B:PRO1327
|
4.5
|
41.6
|
1.0
|
C9
|
B:HFG1801
|
4.5
|
37.3
|
0.9
|
O
|
B:HOH2055
|
4.7
|
47.0
|
0.8
|
CD1
|
B:LEU1294
|
4.8
|
44.4
|
1.0
|
CD
|
B:PRO1327
|
4.8
|
36.7
|
1.0
|
CA
|
B:PRO1306
|
4.8
|
68.4
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 8je7
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Chlorine Binding Sites List in 8je7
Chlorine binding site 4 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1807
b:53.5
occ:0.56
|
CL
|
B:CL1807
|
0.0
|
53.5
|
0.6
|
CL
|
B:CL1807
|
2.0
|
62.1
|
0.4
|
N
|
B:ARG1350
|
3.0
|
38.3
|
1.0
|
CA
|
B:ILE1349
|
3.6
|
40.1
|
1.0
|
O
|
B:ARG1350
|
3.8
|
37.1
|
1.0
|
C
|
B:ILE1349
|
3.8
|
45.2
|
1.0
|
O
|
B:HOH2090
|
3.8
|
56.2
|
1.0
|
CA
|
B:ARG1350
|
4.0
|
38.5
|
1.0
|
C
|
B:ARG1350
|
4.0
|
40.1
|
1.0
|
O
|
B:PRO1348
|
4.1
|
39.7
|
1.0
|
CG2
|
B:ILE1349
|
4.1
|
50.4
|
1.0
|
CB
|
B:ILE1349
|
4.3
|
46.3
|
1.0
|
CD2
|
B:LEU1351
|
4.4
|
33.6
|
1.0
|
CG
|
B:LEU1351
|
4.4
|
36.9
|
1.0
|
CB
|
B:ARG1350
|
4.6
|
42.7
|
1.0
|
N
|
B:ILE1349
|
4.7
|
42.2
|
1.0
|
CG1
|
B:ILE1349
|
4.7
|
54.1
|
1.0
|
C
|
B:PRO1348
|
4.8
|
45.4
|
1.0
|
O
|
B:HOH1928
|
4.9
|
57.9
|
1.0
|
N
|
B:LEU1351
|
4.9
|
33.8
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 8je7
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Chlorine Binding Sites List in 8je7
Chlorine binding site 5 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1807
b:62.1
occ:0.44
|
CL
|
B:CL1807
|
0.0
|
62.1
|
0.4
|
CL
|
B:CL1807
|
2.0
|
53.5
|
0.6
|
O
|
B:HOH2090
|
2.6
|
56.2
|
1.0
|
O
|
B:ARG1350
|
3.5
|
37.1
|
1.0
|
O
|
B:GLY1279
|
3.7
|
44.1
|
1.0
|
N
|
B:ARG1350
|
3.8
|
38.3
|
1.0
|
CG
|
B:LYS1281
|
3.9
|
42.0
|
1.0
|
CB
|
B:ARG1350
|
4.1
|
42.7
|
1.0
|
C
|
B:ARG1350
|
4.2
|
40.1
|
1.0
|
CD
|
B:LYS1281
|
4.2
|
54.2
|
1.0
|
CA
|
B:ARG1350
|
4.3
|
38.5
|
1.0
|
CE
|
B:LYS1281
|
4.4
|
57.1
|
1.0
|
CB
|
B:LYS1281
|
4.5
|
36.9
|
1.0
|
N
|
B:LYS1281
|
4.6
|
31.6
|
1.0
|
O
|
B:PRO1348
|
4.8
|
39.7
|
1.0
|
C
|
B:ILE1349
|
4.9
|
45.2
|
1.0
|
C
|
B:GLY1279
|
4.9
|
37.5
|
1.0
|
CG
|
B:ARG1350
|
4.9
|
45.6
|
1.0
|
O
|
B:HOH1928
|
5.0
|
57.9
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 8je7
Go back to
Chlorine Binding Sites List in 8je7
Chlorine binding site 6 out
of 6 in the Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Anopheles Culicifacies Prolyl-Trna Synthetase (Acprs) in Complex with Two Inhibitors (Halofuginone and L95) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1808
b:46.8
occ:0.53
|
ND1
|
B:HIS1258
|
2.8
|
46.1
|
0.6
|
O
|
B:HOH1983
|
3.3
|
38.4
|
1.0
|
N
|
B:HIS1258
|
3.4
|
35.2
|
1.0
|
CB
|
B:ARG1257
|
3.5
|
34.5
|
1.0
|
NE
|
B:ARG1257
|
3.6
|
40.9
|
1.0
|
CE1
|
B:HIS1258
|
3.7
|
46.7
|
0.6
|
CG
|
B:HIS1258
|
3.8
|
38.8
|
0.6
|
CB
|
B:HIS1258
|
4.0
|
38.4
|
0.5
|
CA
|
B:ARG1257
|
4.0
|
42.3
|
1.0
|
CB
|
B:HIS1258
|
4.1
|
38.8
|
0.6
|
NH2
|
B:ARG1257
|
4.1
|
50.8
|
1.0
|
C
|
B:ARG1257
|
4.2
|
39.2
|
1.0
|
CG
|
B:ARG1257
|
4.2
|
41.1
|
1.0
|
CA
|
B:HIS1258
|
4.3
|
37.1
|
0.5
|
CA
|
B:HIS1258
|
4.3
|
37.0
|
0.6
|
CZ
|
B:ARG1257
|
4.3
|
47.8
|
1.0
|
CD2
|
A:LEU1351
|
4.4
|
35.6
|
1.0
|
CD1
|
A:LEU1351
|
4.4
|
35.5
|
1.0
|
CD
|
B:ARG1257
|
4.5
|
39.8
|
1.0
|
CZ3
|
A:TRP1340
|
4.7
|
38.6
|
1.0
|
CH2
|
A:TRP1340
|
4.7
|
48.6
|
1.0
|
NE2
|
B:HIS1258
|
4.8
|
40.3
|
0.6
|
CD2
|
B:HIS1258
|
4.9
|
42.8
|
0.6
|
CG
|
B:HIS1258
|
4.9
|
34.4
|
0.5
|
|
Reference:
R.Goswami,
J.Chhibber-Goel,
Y.Manickam,
S.Gupta,
K.Harlos,
B.Laleu,
A.Sharma.
Targeting Prolyl-Trna Synthetase of Anopheles Culicifacies For the Development of New Larvicide To Be Published.
Page generated: Tue Dec 10 19:24:22 2024
|