Chlorine in PDB 8jj3: Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5

The binding sites of Chlorine atom in the Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5 (pdb code 8jj3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5, PDB code: 8jj3:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl401 b:58.7 occ:1.00 O E:HOH526 3.3 67.6 1.0 NH1 A:ARG85 3.4 51.5 1.0 N A:PHE78 3.5 40.3 1.0 N A:ARG85 3.8 60.0 1.0 CD2 A:PHE78 4.0 44.0 1.0 CG A:ARG85 4.0 49.6 1.0 CB A:PHE78 4.0 40.5 1.0 CA A:ARG77 4.1 44.9 1.0 CD A:ARG85 4.1 50.5 1.0 CA A:ALA84 4.1 51.2 1.0 C A:ARG77 4.3 42.9 1.0 CA A:PHE78 4.3 37.6 1.0 CG A:ARG77 4.4 53.6 1.0 CB A:ARG85 4.4 51.6 1.0 CB A:ALA84 4.4 48.0 1.0 CZ A:ARG85 4.5 51.9 1.0 CB A:ARG77 4.5 48.5 1.0 CG A:PHE78 4.5 42.3 1.0 O A:PHE78 4.5 49.6 1.0 C A:ALA84 4.5 60.2 1.0 CG2 A:VAL81 4.6 40.4 1.0 O A:HOH508 4.7 63.1 1.0 NE A:ARG85 4.7 53.5 1.0 CA A:ARG85 4.8 55.8 1.0 O A:ILE76 4.8 57.8 1.0 C A:PHE78 4.9 40.6 1.0

Chlorine binding site 2 out of 5 in the Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl401 b:58.7 occ:1.00 O B:HOH526 3.3 67.6 1.0 NH1 C:ARG85 3.4 51.5 1.0 N C:PHE78 3.5 40.3 1.0 N C:ARG85 3.8 60.0 1.0 CD2 C:PHE78 4.0 44.0 1.0 CG C:ARG85 4.0 49.6 1.0 CB C:PHE78 4.0 40.5 1.0 CA C:ARG77 4.1 44.9 1.0 CD C:ARG85 4.1 50.5 1.0 CA C:ALA84 4.1 51.2 1.0 C C:ARG77 4.3 42.9 1.0 CA C:PHE78 4.3 37.6 1.0 CG C:ARG77 4.4 53.6 1.0 CB C:ARG85 4.4 51.6 1.0 CB C:ALA84 4.4 48.0 1.0 CZ C:ARG85 4.5 51.9 1.0 CB C:ARG77 4.5 48.5 1.0 CG C:PHE78 4.5 42.3 1.0 O C:PHE78 4.5 49.6 1.0 C C:ALA84 4.5 60.2 1.0 CG2 C:VAL81 4.6 40.4 1.0 O C:HOH508 4.7 63.1 1.0 NE C:ARG85 4.7 53.5 1.0 CA C:ARG85 4.8 55.8 1.0 O C:ILE76 4.8 57.8 1.0 C C:PHE78 4.9 40.6 1.0

Chlorine binding site 3 out of 5 in the Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl402 b:58.7 occ:1.00 O A:HOH526 3.3 67.6 1.0 NH1 B:ARG85 3.4 51.5 1.0 N B:PHE78 3.5 40.3 1.0 N B:ARG85 3.8 60.0 1.0 CD2 B:PHE78 4.0 44.0 1.0 CG B:ARG85 4.0 49.6 1.0 CB B:PHE78 4.0 40.5 1.0 CA B:ARG77 4.1 44.9 1.0 CD B:ARG85 4.1 50.5 1.0 CA B:ALA84 4.1 51.2 1.0 C B:ARG77 4.3 42.9 1.0 CA B:PHE78 4.3 37.6 1.0 CG B:ARG77 4.4 53.6 1.0 CB B:ARG85 4.4 51.6 1.0 CB B:ALA84 4.4 48.0 1.0 CZ B:ARG85 4.5 51.9 1.0 CB B:ARG77 4.5 48.5 1.0 CG B:PHE78 4.5 42.3 1.0 O B:PHE78 4.5 49.6 1.0 C B:ALA84 4.5 60.2 1.0 CG2 B:VAL81 4.6 40.4 1.0 O B:HOH508 4.7 63.1 1.0 NE B:ARG85 4.7 53.5 1.0 CA B:ARG85 4.8 55.8 1.0 O B:ILE76 4.8 57.8 1.0 C B:PHE78 4.9 40.6 1.0

Chlorine binding site 4 out of 5 in the Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl402 b:58.7 occ:1.00 O C:HOH526 3.3 67.6 1.0 NH1 D:ARG85 3.4 51.5 1.0 N D:PHE78 3.5 40.3 1.0 N D:ARG85 3.8 60.0 1.0 CD2 D:PHE78 4.0 44.0 1.0 CG D:ARG85 4.0 49.6 1.0 CB D:PHE78 4.0 40.5 1.0 CA D:ARG77 4.1 44.9 1.0 CD D:ARG85 4.1 50.5 1.0 CA D:ALA84 4.1 51.2 1.0 C D:ARG77 4.3 42.9 1.0 CA D:PHE78 4.3 37.6 1.0 CG D:ARG77 4.4 53.6 1.0 CB D:ARG85 4.4 51.6 1.0 CB D:ALA84 4.4 48.0 1.0 CZ D:ARG85 4.5 51.9 1.0 CB D:ARG77 4.5 48.5 1.0 CG D:PHE78 4.5 42.3 1.0 O D:PHE78 4.5 49.6 1.0 C D:ALA84 4.5 60.2 1.0 CG2 D:VAL81 4.6 40.4 1.0 O D:HOH507 4.7 63.1 1.0 NE D:ARG85 4.7 53.5 1.0 CA D:ARG85 4.8 55.8 1.0 O D:ILE76 4.8 57.8 1.0 C D:PHE78 4.9 40.6 1.0

Chlorine binding site 5 out of 5 in the Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Cryo-Em Structure of Nanodisc (Pe:Ps:Pc) Reconstituted Glic at pH 2.5 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl402 b:58.7 occ:1.00 O D:HOH527 3.3 67.6 1.0 NH1 E:ARG85 3.4 51.5 1.0 N E:PHE78 3.5 40.3 1.0 N E:ARG85 3.8 60.0 1.0 CD2 E:PHE78 4.0 44.0 1.0 CG E:ARG85 4.0 49.6 1.0 CB E:PHE78 4.0 40.5 1.0 CA E:ARG77 4.1 44.9 1.0 CD E:ARG85 4.1 50.5 1.0 CA E:ALA84 4.1 51.2 1.0 C E:ARG77 4.3 42.9 1.0 CA E:PHE78 4.3 37.6 1.0 CG E:ARG77 4.4 53.6 1.0 CB E:ARG85 4.4 51.6 1.0 CB E:ALA84 4.4 48.0 1.0 CZ E:ARG85 4.5 51.9 1.0 CB E:ARG77 4.5 48.5 1.0 CG E:PHE78 4.5 42.3 1.0 O E:PHE78 4.5 49.6 1.0 C E:ALA84 4.5 60.2 1.0 CG2 E:VAL81 4.6 40.4 1.0 O E:HOH508 4.7 63.1 1.0 NE E:ARG85 4.7 53.5 1.0 CA E:ARG85 4.8 55.8 1.0 O E:ILE76 4.8 57.8 1.0 C E:PHE78 4.9 40.6 1.0

N.Bharambe, Z.Li, D.Seiferth, A.M.Balakrishna, P.C.Biggin, S.Basak. Cryo-Em Structures of Prokaryotic Ligand-Gated Ion Channel Glic Provide Insights Into Gating in A Lipid Environment. Nat Commun V. 15 2967 2024.
ISSN: ESSN 2041-1723
PubMed: 38580666
DOI: 10.1038/S41467-024-47370-W