Chlorine in PDB 8jmn: Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-21

The structure of Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-21 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Fluorine	(F)	3 atoms

The binding sites of Chlorine atom in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-21 (pdb code 8jmn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-21, PDB code: 8jmn:

Chlorine binding site 1 out of 1 in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-21


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-21 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1106 b:61.7 occ:1.00 CL1 A:UOU1106 0.0 61.7 1.0 C04 A:UOU1106 1.7 41.6 1.0 C05 A:UOU1106 2.7 37.6 1.0 C03 A:UOU1106 2.7 38.0 1.0 CB A:ALA123 3.4 41.6 1.0 O A:MET334 3.6 36.5 1.0 O A:ILE119 3.6 39.9 1.0 CG2 A:VAL338 3.7 30.5 1.0 C A:MET334 3.7 31.0 1.0 CA A:CYS120 3.7 33.4 1.0 OD1 A:ASN138 3.8 49.4 1.0 N A:ALA335 3.8 27.6 1.0 CB A:MET334 3.8 33.5 1.0 CG2 A:ILE119 3.9 32.1 1.0 C06 A:UOU1106 4.0 41.8 1.0 C02 A:UOU1106 4.0 35.9 1.0 CA A:ALA335 4.0 26.1 1.0 C A:ILE119 4.0 35.5 1.0 N A:CYS120 4.0 36.3 1.0 SG A:CYS120 4.3 48.5 1.0 CB A:VAL338 4.3 27.3 1.0 CA A:MET334 4.4 31.4 1.0 C01 A:UOU1106 4.5 42.5 1.0 CB A:CYS120 4.5 29.8 1.0 O A:CYS120 4.6 40.5 1.0 C A:CYS120 4.6 38.0 1.0 CB A:ALA335 4.8 28.7 1.0 CA A:ALA123 4.8 41.8 1.0 CB A:ILE119 4.9 37.4 1.0 CG A:ASN138 4.9 48.3 1.0 CG1 A:VAL338 5.0 23.1 1.0

K.Abe, S.Yokoshima, A.Yoshimori. Deep Learning Driven De Novo Drug Design Based on Gastric Proton Pump Structures To Be Published.