Chlorine in PDB 8kdu: Crystal Structure of Trypsin with Its Substrate

Enzymatic activity of Crystal Structure of Trypsin with Its Substrate

All present enzymatic activity of Crystal Structure of Trypsin with Its Substrate:
3.4.21.4;

Protein crystallography data

The structure of Crystal Structure of Trypsin with Its Substrate, PDB code: 8kdu was solved by Z.Akbar, M.S.Ahmad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.83 / 2.30
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 131.116, 131.116, 71.424, 90, 90, 120
R / Rfree (%) 14.6 / 19.8

Other elements in 8kdu:

The structure of Crystal Structure of Trypsin with Its Substrate also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Trypsin with Its Substrate (pdb code 8kdu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Trypsin with Its Substrate, PDB code: 8kdu:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 8kdu

Go back to Chlorine Binding Sites List in 8kdu
Chlorine binding site 1 out of 3 in the Crystal Structure of Trypsin with Its Substrate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Trypsin with Its Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:31.0
occ:1.00
N A:CYS128 3.5 14.0 1.0
SG A:CYS128 4.1 11.5 1.0
CA A:SER127 4.2 15.6 1.0
CB A:CYS128 4.2 12.3 1.0
CB A:SER127 4.2 15.9 1.0
C A:SER127 4.3 14.3 1.0
CA A:CYS128 4.5 13.4 1.0
O A:CYS128 4.8 14.7 1.0

Chlorine binding site 2 out of 3 in 8kdu

Go back to Chlorine Binding Sites List in 8kdu
Chlorine binding site 2 out of 3 in the Crystal Structure of Trypsin with Its Substrate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Trypsin with Its Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:35.0
occ:1.00
N A:GLY174 3.6 14.0 1.0
O A:HOH425 3.8 16.7 1.0
O A:HOH418 3.9 20.7 1.0
CA A:GLY174 4.1 14.1 1.0
CD A:LYS169 4.5 24.1 1.0
C A:PRO173 4.6 13.8 1.0
CA A:PRO173 4.6 13.6 1.0
CB A:LYS169 4.8 18.5 1.0
CG A:LYS169 4.8 22.2 1.0

Chlorine binding site 3 out of 3 in 8kdu

Go back to Chlorine Binding Sites List in 8kdu
Chlorine binding site 3 out of 3 in the Crystal Structure of Trypsin with Its Substrate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Trypsin with Its Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl309

b:20.6
occ:1.00
O A:HOH516 3.2 18.1 1.0
O A:HOH505 3.3 25.8 1.0
N A:ASP165 3.4 14.1 1.0
CA A:SER164 3.9 12.2 1.0
CB A:ASP165 4.1 19.6 1.0
CB A:ALA132 4.1 9.7 1.0
C A:SER164 4.2 12.7 1.0
CA A:ASP165 4.4 17.0 1.0
CB A:SER164 4.5 11.7 1.0
N A:ALA132 4.9 9.7 1.0

Reference:

Z.Akbar, M.S.Ahmad. Crystal Structure of Trypsin with Its Substrate To Be Published.
Page generated: Sat Sep 28 19:25:48 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy