Chlorine in PDB 8otb: Clostridium Perfringens Chitinase CP4_3455
Protein crystallography data
The structure of Clostridium Perfringens Chitinase CP4_3455, PDB code: 8otb
was solved by
Y.Bloch,
S.N.Savvides,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.43 /
1.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
50.47,
109.03,
111.58,
90,
90,
90
|
R / Rfree (%)
|
15.8 /
17.5
|
Other elements in 8otb:
The structure of Clostridium Perfringens Chitinase CP4_3455 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Clostridium Perfringens Chitinase CP4_3455
(pdb code 8otb). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Clostridium Perfringens Chitinase CP4_3455, PDB code: 8otb:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 8otb
Go back to
Chlorine Binding Sites List in 8otb
Chlorine binding site 1 out
of 2 in the Clostridium Perfringens Chitinase CP4_3455
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Clostridium Perfringens Chitinase CP4_3455 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl703
b:28.6
occ:1.00
|
H
|
A:ASP146
|
2.5
|
37.9
|
1.0
|
HB2
|
A:ASP146
|
2.6
|
40.1
|
1.0
|
HA
|
A:TYR144
|
2.8
|
36.8
|
1.0
|
HD2
|
A:PRO145
|
3.2
|
40.3
|
1.0
|
N
|
A:ASP146
|
3.3
|
31.6
|
1.0
|
HG23
|
A:VAL147
|
3.3
|
26.1
|
1.0
|
HD1
|
A:TYR144
|
3.4
|
35.9
|
1.0
|
C
|
A:TYR144
|
3.5
|
31.0
|
1.0
|
CB
|
A:ASP146
|
3.5
|
33.4
|
1.0
|
CA
|
A:TYR144
|
3.5
|
30.6
|
1.0
|
HB3
|
A:TYR144
|
3.6
|
35.8
|
1.0
|
N
|
A:PRO145
|
3.7
|
32.0
|
1.0
|
H
|
A:VAL147
|
3.7
|
28.7
|
1.0
|
O
|
A:HOH985
|
3.7
|
36.5
|
1.0
|
CA
|
A:ASP146
|
3.8
|
31.0
|
1.0
|
CD
|
A:PRO145
|
3.9
|
33.6
|
1.0
|
O
|
A:TYR144
|
3.9
|
30.8
|
1.0
|
CB
|
A:TYR144
|
4.0
|
29.9
|
1.0
|
N
|
A:VAL147
|
4.1
|
23.9
|
1.0
|
CG
|
A:ASP146
|
4.2
|
38.9
|
1.0
|
C
|
A:ASP146
|
4.2
|
28.0
|
1.0
|
HG2
|
A:PRO145
|
4.2
|
42.6
|
1.0
|
CD1
|
A:TYR144
|
4.2
|
29.9
|
1.0
|
HB3
|
A:ASP146
|
4.2
|
40.1
|
1.0
|
CG2
|
A:VAL147
|
4.3
|
21.7
|
1.0
|
C
|
A:PRO145
|
4.3
|
33.8
|
1.0
|
OD2
|
A:ASP146
|
4.5
|
41.0
|
1.0
|
CG
|
A:TYR144
|
4.6
|
29.1
|
1.0
|
CA
|
A:PRO145
|
4.6
|
34.1
|
1.0
|
HG22
|
A:VAL147
|
4.6
|
26.1
|
1.0
|
CG
|
A:PRO145
|
4.6
|
35.5
|
1.0
|
HD3
|
A:PRO145
|
4.7
|
40.3
|
1.0
|
HA
|
A:ASP146
|
4.7
|
37.2
|
1.0
|
HG21
|
A:VAL147
|
4.7
|
26.1
|
1.0
|
O
|
A:ASN143
|
4.8
|
35.2
|
1.0
|
N
|
A:TYR144
|
4.8
|
32.7
|
1.0
|
OD1
|
A:ASP146
|
4.8
|
41.5
|
1.0
|
HB2
|
A:TYR144
|
4.9
|
35.8
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 8otb
Go back to
Chlorine Binding Sites List in 8otb
Chlorine binding site 2 out
of 2 in the Clostridium Perfringens Chitinase CP4_3455
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Clostridium Perfringens Chitinase CP4_3455 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl704
b:28.6
occ:1.00
|
HD21
|
A:ASN423
|
2.5
|
29.7
|
1.0
|
HB2
|
A:TRP401
|
2.9
|
29.5
|
1.0
|
ND2
|
A:ASN423
|
3.3
|
24.8
|
1.0
|
HD3
|
A:LYS425
|
3.3
|
41.0
|
1.0
|
HB3
|
A:PRO408
|
3.4
|
25.9
|
1.0
|
HG22
|
A:VAL399
|
3.5
|
36.1
|
1.0
|
HE3
|
A:TRP401
|
3.5
|
28.3
|
1.0
|
HD22
|
A:ASN423
|
3.5
|
29.7
|
1.0
|
CB
|
A:TRP401
|
3.8
|
24.6
|
1.0
|
HG21
|
A:VAL399
|
3.9
|
36.1
|
1.0
|
HG13
|
A:VAL399
|
3.9
|
35.9
|
1.0
|
HD2
|
A:LYS425
|
3.9
|
41.0
|
1.0
|
O
|
A:TYR400
|
4.1
|
24.9
|
1.0
|
CD
|
A:LYS425
|
4.1
|
34.2
|
1.0
|
CG2
|
A:VAL399
|
4.1
|
30.1
|
1.0
|
HA
|
A:TRP401
|
4.1
|
29.2
|
1.0
|
HB3
|
A:LYS425
|
4.2
|
34.0
|
1.0
|
CE3
|
A:TRP401
|
4.2
|
23.6
|
1.0
|
CB
|
A:PRO408
|
4.2
|
21.6
|
1.0
|
HB2
|
A:PRO408
|
4.2
|
25.9
|
1.0
|
C
|
A:TYR400
|
4.2
|
24.0
|
1.0
|
HB2
|
A:LYS425
|
4.2
|
34.0
|
1.0
|
CA
|
A:TRP401
|
4.4
|
24.3
|
1.0
|
HB3
|
A:TRP401
|
4.4
|
29.5
|
1.0
|
N
|
A:TRP401
|
4.4
|
24.4
|
1.0
|
CG
|
A:ASN423
|
4.4
|
22.9
|
1.0
|
HG11
|
A:VAL399
|
4.5
|
35.9
|
1.0
|
CG
|
A:TRP401
|
4.6
|
23.7
|
1.0
|
CB
|
A:LYS425
|
4.6
|
28.3
|
1.0
|
CG1
|
A:VAL399
|
4.6
|
29.9
|
1.0
|
CD2
|
A:TRP401
|
4.6
|
23.4
|
1.0
|
OD1
|
A:ASN423
|
4.7
|
23.3
|
1.0
|
HA
|
A:PRO408
|
4.8
|
25.0
|
1.0
|
HA
|
A:TYR400
|
4.8
|
30.3
|
1.0
|
HG23
|
A:VAL399
|
4.8
|
36.1
|
1.0
|
HE2
|
A:LYS425
|
4.8
|
47.4
|
1.0
|
H
|
A:TRP401
|
4.9
|
29.3
|
1.0
|
O
|
A:HOH1163
|
4.9
|
30.8
|
1.0
|
CA
|
A:TYR400
|
5.0
|
25.3
|
1.0
|
CG
|
A:LYS425
|
5.0
|
31.3
|
1.0
|
N
|
A:TYR400
|
5.0
|
25.4
|
1.0
|
|
Reference:
Y.Bloch,
S.N.Savvides.
Clostridium Perfringens Chitinase CP4_3455 To Be Published.
Page generated: Tue Jul 30 11:16:59 2024
|