Chlorine in PDB 8otu: The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii
Protein crystallography data
The structure of The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii, PDB code: 8otu
was solved by
E.Costanzi,
V.Applegate,
S.H.J.Smits,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.31 /
1.40
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
141.133,
45.66,
84.187,
90,
97.83,
90
|
R / Rfree (%)
|
13.2 /
15
|
Other elements in 8otu:
The structure of The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii
(pdb code 8otu). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii, PDB code: 8otu:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 8otu
Go back to
Chlorine Binding Sites List in 8otu
Chlorine binding site 1 out
of 3 in the The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl418
b:24.3
occ:1.00
|
HH21
|
A:ARG180
|
2.5
|
24.8
|
1.0
|
H
|
A:THR198
|
2.5
|
25.4
|
1.0
|
HD3
|
A:PRO133
|
2.9
|
24.3
|
1.0
|
OG1
|
A:THR198
|
2.9
|
32.5
|
1.0
|
HD2
|
A:PRO132
|
2.9
|
23.2
|
1.0
|
HG2
|
A:PRO132
|
3.0
|
23.8
|
1.0
|
HB2
|
A:PRO132
|
3.0
|
22.2
|
1.0
|
HG1
|
A:THR198
|
3.0
|
39.1
|
1.0
|
O
|
A:HOH729
|
3.1
|
31.5
|
1.0
|
HZ3
|
A:TRP196
|
3.1
|
26.8
|
1.0
|
NH2
|
A:ARG180
|
3.2
|
20.7
|
1.0
|
N
|
A:THR198
|
3.3
|
21.2
|
1.0
|
HB
|
A:THR198
|
3.3
|
31.9
|
1.0
|
HE
|
A:ARG180
|
3.5
|
22.6
|
1.0
|
OD1
|
A:ASN197
|
3.5
|
18.6
|
1.0
|
CG
|
A:PRO132
|
3.5
|
19.8
|
1.0
|
CB
|
A:THR198
|
3.6
|
26.6
|
1.0
|
HH22
|
A:ARG180
|
3.6
|
24.8
|
1.0
|
HA
|
A:ASN197
|
3.6
|
22.0
|
1.0
|
CD
|
A:PRO132
|
3.6
|
19.4
|
1.0
|
CB
|
A:PRO132
|
3.7
|
18.5
|
1.0
|
CD
|
A:PRO133
|
3.9
|
20.2
|
1.0
|
CG
|
A:ASN197
|
4.0
|
20.0
|
1.0
|
CZ3
|
A:TRP196
|
4.0
|
22.3
|
1.0
|
CZ
|
A:ARG180
|
4.0
|
18.3
|
1.0
|
NE
|
A:ARG180
|
4.0
|
18.8
|
1.0
|
CA
|
A:THR198
|
4.0
|
23.7
|
1.0
|
HG3
|
A:PRO133
|
4.1
|
27.9
|
1.0
|
HD2
|
A:PRO133
|
4.2
|
24.3
|
1.0
|
C
|
A:ASN197
|
4.3
|
19.6
|
1.0
|
HD21
|
A:ASN197
|
4.3
|
23.9
|
1.0
|
HB3
|
A:PRO132
|
4.3
|
22.2
|
1.0
|
CA
|
A:ASN197
|
4.3
|
18.4
|
1.0
|
HD3
|
A:PRO132
|
4.3
|
23.2
|
1.0
|
ND2
|
A:ASN197
|
4.4
|
19.9
|
1.0
|
CG
|
A:PRO133
|
4.4
|
23.3
|
1.0
|
HG3
|
A:PRO132
|
4.4
|
23.8
|
1.0
|
N
|
A:PRO132
|
4.5
|
18.8
|
1.0
|
HA
|
A:THR198
|
4.5
|
28.5
|
1.0
|
HG2
|
A:PRO133
|
4.6
|
27.9
|
1.0
|
HB3
|
A:GLN131
|
4.6
|
26.9
|
1.0
|
HE3
|
A:TRP196
|
4.6
|
22.9
|
1.0
|
HH2
|
A:TRP196
|
4.7
|
28.9
|
1.0
|
CA
|
A:PRO132
|
4.7
|
18.5
|
1.0
|
CE3
|
A:TRP196
|
4.7
|
19.1
|
1.0
|
CB
|
A:ASN197
|
4.8
|
20.1
|
1.0
|
CH2
|
A:TRP196
|
4.8
|
24.1
|
1.0
|
N
|
A:PRO133
|
4.8
|
19.4
|
1.0
|
H
|
A:SER199
|
4.9
|
26.9
|
1.0
|
HD22
|
A:ASN197
|
4.9
|
23.9
|
1.0
|
CG2
|
A:THR198
|
5.0
|
29.9
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 8otu
Go back to
Chlorine Binding Sites List in 8otu
Chlorine binding site 2 out
of 3 in the The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl419
b:26.1
occ:0.80
|
H
|
A:HIS250
|
2.3
|
19.5
|
1.0
|
O
|
A:HOH511
|
2.7
|
32.2
|
1.0
|
H
|
A:SER219
|
3.0
|
24.8
|
0.3
|
HB2
|
A:ASN249
|
3.0
|
20.3
|
1.0
|
H
|
A:SER219
|
3.0
|
24.4
|
0.7
|
HG
|
A:SER219
|
3.0
|
31.3
|
0.7
|
HB2
|
A:HIS250
|
3.1
|
19.8
|
1.0
|
N
|
A:HIS250
|
3.1
|
16.2
|
1.0
|
HA
|
A:ASN249
|
3.3
|
18.7
|
1.0
|
HA
|
A:ASP218
|
3.4
|
23.7
|
1.0
|
HB3
|
A:HIS250
|
3.4
|
19.8
|
1.0
|
HG12
|
A:ILE220
|
3.5
|
33.5
|
1.0
|
CB
|
A:HIS250
|
3.6
|
16.5
|
1.0
|
CB
|
A:ASN249
|
3.8
|
16.9
|
1.0
|
OG
|
A:SER219
|
3.8
|
26.1
|
0.7
|
N
|
A:SER219
|
3.8
|
20.7
|
0.3
|
N
|
A:SER219
|
3.8
|
20.3
|
0.7
|
CA
|
A:ASN249
|
3.9
|
15.6
|
1.0
|
HB2
|
A:SER219
|
3.9
|
34.6
|
0.3
|
C
|
A:ASN249
|
3.9
|
16.1
|
1.0
|
CA
|
A:HIS250
|
3.9
|
15.3
|
1.0
|
H
|
A:ILE220
|
4.3
|
26.1
|
1.0
|
CA
|
A:ASP218
|
4.3
|
19.7
|
1.0
|
HB3
|
A:ASN249
|
4.3
|
20.3
|
1.0
|
HA
|
A:HIS250
|
4.4
|
18.4
|
1.0
|
CG1
|
A:ILE220
|
4.4
|
27.9
|
1.0
|
O
|
A:ARG217
|
4.4
|
22.4
|
1.0
|
OD1
|
A:ASP218
|
4.5
|
19.3
|
1.0
|
C
|
A:ASP218
|
4.6
|
22.3
|
1.0
|
CB
|
A:SER219
|
4.6
|
28.9
|
0.3
|
HD1
|
A:TYR251
|
4.6
|
21.3
|
1.0
|
HG13
|
A:ILE220
|
4.6
|
33.5
|
1.0
|
HE1
|
A:TYR251
|
4.6
|
22.9
|
1.0
|
HO1
|
A:EDO413
|
4.6
|
51.9
|
1.0
|
CB
|
A:SER219
|
4.7
|
29.6
|
0.7
|
CA
|
A:SER219
|
4.7
|
22.1
|
0.3
|
HB3
|
A:SER219
|
4.7
|
35.5
|
0.7
|
CA
|
A:SER219
|
4.8
|
20.6
|
0.7
|
H
|
A:TYR251
|
4.8
|
19.2
|
1.0
|
HD11
|
A:ILE220
|
4.8
|
41.5
|
1.0
|
CG
|
A:ASN249
|
4.8
|
16.5
|
1.0
|
N
|
A:ILE220
|
4.9
|
21.7
|
1.0
|
OG
|
A:SER219
|
4.9
|
28.0
|
0.3
|
OD1
|
A:ASN249
|
4.9
|
17.0
|
1.0
|
CG
|
A:HIS250
|
4.9
|
17.9
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 8otu
Go back to
Chlorine Binding Sites List in 8otu
Chlorine binding site 3 out
of 3 in the The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl412
b:40.4
occ:1.00
|
H
|
B:SER219
|
2.3
|
30.7
|
1.0
|
HG
|
B:SER219
|
2.3
|
49.5
|
1.0
|
H
|
B:HIS250
|
2.5
|
29.1
|
1.0
|
HB2
|
B:ASN249
|
2.9
|
34.1
|
1.0
|
HB2
|
B:HIS250
|
3.0
|
30.1
|
1.0
|
HA
|
B:ASP218
|
3.0
|
30.1
|
1.0
|
O
|
B:HOH644
|
3.1
|
56.1
|
1.0
|
OG
|
B:SER219
|
3.2
|
41.3
|
1.0
|
N
|
B:SER219
|
3.2
|
25.6
|
1.0
|
N
|
B:HIS250
|
3.2
|
24.3
|
1.0
|
HG13
|
B:ILE220
|
3.6
|
42.8
|
1.0
|
HA
|
B:ASN249
|
3.6
|
31.4
|
1.0
|
HB3
|
B:HIS250
|
3.6
|
30.1
|
1.0
|
CB
|
B:HIS250
|
3.6
|
25.1
|
1.0
|
O
|
B:HOH720
|
3.7
|
59.1
|
1.0
|
CB
|
B:ASN249
|
3.7
|
28.4
|
1.0
|
H
|
B:ILE220
|
3.8
|
32.8
|
1.0
|
CA
|
B:ASP218
|
3.9
|
25.1
|
1.0
|
CB
|
B:SER219
|
4.0
|
36.7
|
1.0
|
CA
|
B:ASN249
|
4.0
|
26.2
|
1.0
|
HB3
|
B:SER219
|
4.0
|
44.0
|
1.0
|
C
|
B:ASP218
|
4.0
|
28.1
|
1.0
|
O
|
B:ARG217
|
4.0
|
33.5
|
1.0
|
CA
|
B:HIS250
|
4.0
|
22.1
|
1.0
|
CA
|
B:SER219
|
4.1
|
29.6
|
1.0
|
C
|
B:ASN249
|
4.1
|
23.6
|
1.0
|
OD1
|
B:ASP218
|
4.1
|
25.8
|
1.0
|
HB3
|
B:ASN249
|
4.2
|
34.1
|
1.0
|
HD12
|
B:ILE220
|
4.2
|
43.6
|
1.0
|
HD11
|
B:ILE220
|
4.3
|
43.6
|
1.0
|
N
|
B:ILE220
|
4.3
|
27.3
|
1.0
|
CG1
|
B:ILE220
|
4.4
|
35.7
|
1.0
|
HA
|
B:HIS250
|
4.4
|
26.5
|
1.0
|
CD1
|
B:ILE220
|
4.5
|
36.3
|
1.0
|
HB
|
B:ILE220
|
4.6
|
36.2
|
1.0
|
C
|
B:SER219
|
4.6
|
29.5
|
1.0
|
N
|
B:ASP218
|
4.7
|
25.9
|
1.0
|
C
|
B:ARG217
|
4.7
|
28.6
|
1.0
|
CG
|
B:ASP218
|
4.8
|
24.7
|
1.0
|
CG
|
B:ASN249
|
4.8
|
30.3
|
1.0
|
HB2
|
B:SER219
|
4.9
|
44.0
|
1.0
|
HA
|
B:SER219
|
4.9
|
35.6
|
1.0
|
CB
|
B:ASP218
|
4.9
|
23.9
|
1.0
|
CG
|
B:HIS250
|
4.9
|
23.7
|
1.0
|
CB
|
B:ILE220
|
5.0
|
30.2
|
1.0
|
|
Reference:
E.Costanzi,
V.Applegate,
S.H.J.Smits.
The Crystal Structure of PET44, A Petase Enzyme From Alkalilimnicola Ehrlichii To Be Published.
Page generated: Wed Nov 13 07:50:06 2024
|