Chlorine in PDB 8p1a: Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv

Enzymatic activity of Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv

All present enzymatic activity of Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv, PDB code: 8p1a was solved by J.Nan, F.Leonarski, A.Furrer, F.Dworkowski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.94 / 2.05
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.3, 78.3, 37.96, 90, 90, 90
R / Rfree (%) 17.2 / 22.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv (pdb code 8p1a). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv, PDB code: 8p1a:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8p1a

Go back to Chlorine Binding Sites List in 8p1a
Chlorine binding site 1 out of 2 in the Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:29.4
occ:1.00
ND2 A:ASN113 3.2 18.9 1.0
O A:HOH349 3.4 28.8 1.0
CB A:ASN113 3.4 23.7 1.0
CG A:ASN113 3.8 23.1 1.0
CA A:ALA110 3.9 17.5 1.0
O A:VAL109 3.9 15.7 1.0
CG1 A:VAL109 4.1 24.1 1.0
CD A:ARG114 4.2 22.2 1.0
C A:VAL109 4.2 19.6 1.0
N A:ALA110 4.3 19.8 1.0
CG A:ARG114 4.3 24.8 1.0
CB A:ALA110 4.5 18.3 1.0
CA A:ASN113 4.8 27.4 1.0
C A:ALA110 4.9 18.9 1.0
CB A:VAL109 5.0 27.9 1.0

Chlorine binding site 2 out of 2 in 8p1a

Go back to Chlorine Binding Sites List in 8p1a
Chlorine binding site 2 out of 2 in the Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lysozyme Structure Solved From Serial Crystallography Data Collected at 2 Khz For 5 Seconds with Jungfrau Detector at Maxiv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:42.0
occ:1.00
N A:GLY26 2.9 23.1 1.0
OG A:SER24 3.0 25.2 1.0
CA A:GLY26 3.3 19.7 1.0
O A:HOH367 3.5 36.9 1.0
CB A:SER24 3.5 27.9 1.0
CA A:GLN121 3.5 31.0 1.0
CD1 A:ILE124 3.8 31.4 1.0
CB A:GLN121 3.9 30.2 1.0
N A:GLN121 3.9 30.7 1.0
CG A:GLN121 4.0 42.5 1.0
N A:LEU25 4.1 27.7 1.0
C A:LEU25 4.1 19.4 1.0
CG1 A:ILE124 4.2 29.3 1.0
C A:SER24 4.2 21.8 1.0
O A:VAL120 4.2 28.1 1.0
C A:VAL120 4.3 32.1 1.0
CG2 A:VAL120 4.4 24.5 1.0
C A:GLY26 4.4 20.8 1.0
CA A:SER24 4.5 24.2 1.0
CA A:LEU25 4.5 19.3 1.0
N A:ASN27 4.6 19.6 1.0
O A:SER24 4.6 23.9 1.0
C A:GLN121 4.7 27.8 1.0
CB A:LEU25 4.8 24.5 1.0
O A:GLN121 4.9 33.1 1.0

Reference:

F.Leonarski, J.Nan, Z.Matej, Q.Bertrand, A.Furrer, I.Gorgisyan, M.Bjelcic, M.Kepa, H.Glover, V.Hinger, T.Eriksson, A.Cehovin, M.Eguiraun, P.Gasparotto, A.Mozzanica, T.Weinert, A.Gonzalez, J.Standfuss, M.Wang, T.Ursby, F.Dworkowski. Kilohertz Serial Crystallography with the Jungfrau Detector at A 4TH Generation Synchrotron Source To Be Published.
Page generated: Tue Jul 30 11:22:49 2024

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