Chlorine in PDB 8p2q: Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh:
3.2.1.17;
Protein crystallography data
The structure of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh, PDB code: 8p2q
was solved by
Z.Alsalman,
E.Girard,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.57 /
1.69
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.143,
77.143,
37.695,
90,
90,
90
|
R / Rfree (%)
|
15.9 /
19.5
|
Other elements in 8p2q:
The structure of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
(pdb code 8p2q). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh, PDB code: 8p2q:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 8p2q
Go back to
Chlorine Binding Sites List in 8p2q
Chlorine binding site 1 out
of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:24.8
occ:1.00
|
H
|
A:GLY26
|
2.4
|
18.1
|
1.0
|
HA
|
A:GLN121
|
2.8
|
25.8
|
1.0
|
HB2
|
A:SER24
|
2.9
|
20.7
|
1.0
|
HA3
|
A:GLY26
|
3.0
|
20.8
|
1.0
|
OG
|
A:SER24
|
3.1
|
17.9
|
1.0
|
O
|
A:HOH411
|
3.1
|
39.3
|
1.0
|
N
|
A:GLY26
|
3.2
|
15.1
|
1.0
|
HD13
|
A:ILE124
|
3.4
|
41.2
|
1.0
|
CB
|
A:SER24
|
3.5
|
17.3
|
1.0
|
HB2
|
A:GLN121
|
3.5
|
31.9
|
1.0
|
HG23
|
A:VAL120
|
3.5
|
28.2
|
1.0
|
HD11
|
A:ILE124
|
3.6
|
41.2
|
1.0
|
CA
|
A:GLN121
|
3.6
|
21.5
|
1.0
|
CA
|
A:GLY26
|
3.6
|
17.3
|
1.0
|
HG2
|
A:GLN121
|
3.8
|
39.4
|
1.0
|
HG
|
A:SER24
|
3.8
|
21.5
|
1.0
|
CD1
|
A:ILE124
|
3.9
|
34.3
|
1.0
|
CB
|
A:GLN121
|
3.9
|
26.6
|
1.0
|
H
|
A:LEU25
|
4.0
|
20.7
|
1.0
|
N
|
A:GLN121
|
4.0
|
19.1
|
1.0
|
HG12
|
A:ILE124
|
4.0
|
25.6
|
1.0
|
N
|
A:LEU25
|
4.1
|
17.2
|
1.0
|
HB3
|
A:SER24
|
4.1
|
20.7
|
1.0
|
H
|
A:ASN27
|
4.2
|
17.5
|
1.0
|
HB3
|
A:LEU25
|
4.3
|
20.0
|
1.0
|
H
|
A:GLN121
|
4.3
|
22.9
|
1.0
|
HA2
|
A:GLY26
|
4.3
|
20.8
|
1.0
|
C
|
A:SER24
|
4.3
|
14.1
|
1.0
|
CG
|
A:GLN121
|
4.3
|
32.8
|
1.0
|
C
|
A:LEU25
|
4.3
|
15.5
|
1.0
|
C
|
A:VAL120
|
4.4
|
17.9
|
1.0
|
CG2
|
A:VAL120
|
4.4
|
23.5
|
1.0
|
O
|
A:VAL120
|
4.4
|
19.8
|
1.0
|
HG21
|
A:VAL120
|
4.4
|
28.2
|
1.0
|
HG3
|
A:GLN121
|
4.5
|
39.4
|
1.0
|
CG1
|
A:ILE124
|
4.5
|
21.3
|
1.0
|
CA
|
A:SER24
|
4.5
|
17.1
|
1.0
|
C
|
A:GLY26
|
4.6
|
14.8
|
1.0
|
CA
|
A:LEU25
|
4.7
|
18.2
|
1.0
|
N
|
A:ASN27
|
4.7
|
14.6
|
1.0
|
HD12
|
A:ILE124
|
4.7
|
41.2
|
1.0
|
O
|
A:SER24
|
4.8
|
15.4
|
1.0
|
HB
|
A:VAL120
|
4.8
|
23.0
|
1.0
|
C
|
A:GLN121
|
4.8
|
21.7
|
1.0
|
HG22
|
A:ILE124
|
4.8
|
23.7
|
1.0
|
HB3
|
A:GLN121
|
4.8
|
31.9
|
1.0
|
HD22
|
A:ASN27
|
4.9
|
25.1
|
1.0
|
CB
|
A:LEU25
|
5.0
|
16.7
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 8p2q
Go back to
Chlorine Binding Sites List in 8p2q
Chlorine binding site 2 out
of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:25.1
occ:1.00
|
H
|
A:THR69
|
2.3
|
26.2
|
1.0
|
O
|
A:HOH379
|
3.1
|
15.7
|
1.0
|
N
|
A:THR69
|
3.2
|
21.8
|
1.0
|
HA2
|
A:GLY67
|
3.2
|
19.9
|
1.0
|
H
|
A:GLY67
|
3.2
|
19.5
|
1.0
|
O
|
A:HOH326
|
3.2
|
33.5
|
1.0
|
O
|
A:THR69
|
3.3
|
21.0
|
1.0
|
O
|
A:HOH412
|
3.3
|
30.9
|
1.0
|
H
|
A:ARG68
|
3.4
|
20.7
|
1.0
|
N
|
A:ARG68
|
3.5
|
17.3
|
1.0
|
C
|
A:GLY67
|
3.5
|
25.4
|
1.0
|
HB
|
A:THR69
|
3.5
|
21.5
|
1.0
|
CA
|
A:GLY67
|
3.6
|
16.6
|
1.0
|
C
|
A:THR69
|
3.6
|
20.4
|
1.0
|
OG
|
A:SER72
|
3.6
|
25.5
|
1.0
|
N
|
A:GLY67
|
3.6
|
16.3
|
1.0
|
OD1
|
A:ASN65
|
3.7
|
22.2
|
1.0
|
HG
|
A:SER72
|
3.8
|
30.6
|
1.0
|
CA
|
A:THR69
|
3.8
|
18.3
|
1.0
|
O
|
A:HOH403
|
4.0
|
24.2
|
1.0
|
CB
|
A:THR69
|
4.1
|
17.9
|
1.0
|
O
|
A:GLY67
|
4.1
|
23.5
|
1.0
|
C
|
A:ARG68
|
4.2
|
22.6
|
1.0
|
H
|
A:ASP66
|
4.2
|
21.6
|
1.0
|
OD1
|
A:ASP66
|
4.3
|
17.4
|
1.0
|
CA
|
A:ARG68
|
4.3
|
22.1
|
1.0
|
HG1
|
A:THR69
|
4.3
|
21.5
|
1.0
|
HA
|
A:ARG68
|
4.4
|
26.5
|
1.0
|
N
|
A:PRO70
|
4.4
|
23.2
|
1.0
|
HA
|
A:PRO70
|
4.4
|
33.7
|
1.0
|
HA3
|
A:GLY67
|
4.5
|
19.9
|
1.0
|
H
|
A:SER72
|
4.6
|
31.7
|
1.0
|
NA
|
A:NA207
|
4.6
|
20.9
|
1.0
|
HA
|
A:THR69
|
4.7
|
22.0
|
1.0
|
C
|
A:ASP66
|
4.7
|
16.4
|
1.0
|
OG1
|
A:THR69
|
4.7
|
17.9
|
1.0
|
N
|
A:ASP66
|
4.9
|
18.0
|
1.0
|
CG
|
A:ASN65
|
4.9
|
22.6
|
1.0
|
HA
|
A:ASN65
|
4.9
|
16.9
|
1.0
|
CB
|
A:SER72
|
4.9
|
28.3
|
1.0
|
CA
|
A:PRO70
|
4.9
|
28.1
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 8p2q
Go back to
Chlorine Binding Sites List in 8p2q
Chlorine binding site 3 out
of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl204
b:32.5
occ:0.80
|
H
|
A:ILE88
|
2.4
|
20.6
|
1.0
|
HG12
|
A:ILE88
|
2.6
|
21.7
|
1.0
|
HA
|
A:ASP87
|
2.9
|
20.8
|
1.0
|
HZ
|
A:PHE3
|
3.2
|
19.9
|
1.0
|
N
|
A:ILE88
|
3.3
|
17.2
|
1.0
|
HH22
|
A:ARG14
|
3.3
|
30.3
|
1.0
|
HG22
|
A:ILE88
|
3.3
|
26.5
|
1.0
|
HE1
|
A:HIS15
|
3.3
|
30.2
|
1.0
|
HB1
|
A:ALA11
|
3.4
|
21.2
|
1.0
|
O
|
A:HOH310
|
3.5
|
34.7
|
1.0
|
CG1
|
A:ILE88
|
3.6
|
18.1
|
1.0
|
CA
|
A:ASP87
|
3.8
|
17.3
|
1.0
|
O
|
A:SER86
|
3.9
|
29.4
|
1.0
|
NH2
|
A:ARG14
|
4.0
|
25.3
|
1.0
|
HG13
|
A:ILE88
|
4.0
|
21.7
|
1.0
|
C
|
A:ASP87
|
4.0
|
17.6
|
1.0
|
HH21
|
A:ARG14
|
4.0
|
30.3
|
1.0
|
CG2
|
A:ILE88
|
4.1
|
22.1
|
1.0
|
CZ
|
A:PHE3
|
4.1
|
16.6
|
1.0
|
HB2
|
A:ALA11
|
4.1
|
21.2
|
1.0
|
CB
|
A:ILE88
|
4.1
|
15.4
|
1.0
|
OD1
|
A:ASP87
|
4.1
|
25.3
|
1.0
|
CE1
|
A:HIS15
|
4.2
|
25.2
|
1.0
|
CB
|
A:ALA11
|
4.2
|
17.7
|
1.0
|
CA
|
A:ILE88
|
4.2
|
17.4
|
1.0
|
HE2
|
A:PHE3
|
4.4
|
22.9
|
1.0
|
HD12
|
A:ILE88
|
4.4
|
28.2
|
1.0
|
CD1
|
A:ILE88
|
4.4
|
23.6
|
1.0
|
HD13
|
A:ILE88
|
4.5
|
28.2
|
1.0
|
HG23
|
A:ILE88
|
4.5
|
26.5
|
1.0
|
CG
|
A:ASP87
|
4.6
|
41.9
|
1.0
|
H
|
A:THR89
|
4.6
|
22.0
|
1.0
|
HB3
|
A:ALA11
|
4.6
|
21.2
|
1.0
|
CE2
|
A:PHE3
|
4.7
|
19.1
|
1.0
|
CB
|
A:ASP87
|
4.7
|
22.0
|
1.0
|
HG21
|
A:ILE88
|
4.7
|
26.5
|
1.0
|
N
|
A:ASP87
|
4.8
|
17.9
|
1.0
|
C
|
A:SER86
|
4.8
|
21.8
|
1.0
|
ND1
|
A:HIS15
|
4.9
|
31.1
|
1.0
|
HZ1
|
A:LYS1
|
4.9
|
35.0
|
0.5
|
HB2
|
A:ASP87
|
4.9
|
26.4
|
1.0
|
HH12
|
A:ARG14
|
5.0
|
38.3
|
1.0
|
HA
|
A:ILE88
|
5.0
|
20.8
|
1.0
|
N
|
A:THR89
|
5.0
|
18.4
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 8p2q
Go back to
Chlorine Binding Sites List in 8p2q
Chlorine binding site 4 out
of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:27.8
occ:1.00
|
OH
|
A:TYR23
|
2.8
|
17.7
|
1.0
|
O
|
A:HOH393
|
3.1
|
34.1
|
1.0
|
HE2
|
A:TYR23
|
3.3
|
19.8
|
1.0
|
HH
|
A:TYR23
|
3.3
|
21.2
|
1.0
|
HA3
|
A:GLY104
|
3.4
|
17.7
|
1.0
|
CZ
|
A:TYR23
|
3.6
|
17.8
|
1.0
|
O
|
A:HOH358
|
3.6
|
22.7
|
1.0
|
O
|
A:HOH374
|
3.7
|
28.7
|
1.0
|
CE2
|
A:TYR23
|
3.7
|
16.5
|
1.0
|
CA
|
A:GLY104
|
4.3
|
14.8
|
1.0
|
HA2
|
A:GLY104
|
4.3
|
17.7
|
1.0
|
H
|
A:MET105
|
4.6
|
17.7
|
1.0
|
O
|
A:ARG21
|
4.7
|
18.9
|
1.0
|
CE1
|
A:TYR23
|
4.8
|
16.5
|
1.0
|
CD2
|
A:TYR23
|
4.9
|
15.3
|
1.0
|
N
|
A:GLY104
|
4.9
|
14.5
|
1.0
|
HB3
|
A:ARG21
|
5.0
|
22.2
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 8p2q
Go back to
Chlorine Binding Sites List in 8p2q
Chlorine binding site 5 out
of 5 in the Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl206
b:31.0
occ:1.00
|
HE
|
A:ARG114
|
2.0
|
20.9
|
1.0
|
HH21
|
A:ARG114
|
2.8
|
22.8
|
1.0
|
HB3
|
A:ARG114
|
2.9
|
20.6
|
1.0
|
NE
|
A:ARG114
|
2.9
|
17.4
|
1.0
|
O
|
A:HOH331
|
3.0
|
21.3
|
1.0
|
HG2
|
A:ARG114
|
3.4
|
21.7
|
1.0
|
NH2
|
A:ARG114
|
3.4
|
19.0
|
1.0
|
CZ
|
A:ARG114
|
3.6
|
21.4
|
1.0
|
CB
|
A:ARG114
|
3.7
|
17.2
|
1.0
|
CG
|
A:ARG114
|
3.8
|
18.1
|
1.0
|
HZ
|
A:PHE34
|
3.8
|
23.2
|
1.0
|
CZ
|
A:PHE34
|
3.9
|
19.4
|
1.0
|
CD
|
A:ARG114
|
3.9
|
20.5
|
1.0
|
HA
|
A:ARG114
|
4.0
|
17.2
|
1.0
|
CE1
|
A:PHE34
|
4.2
|
15.3
|
1.0
|
HH22
|
A:ARG114
|
4.2
|
22.8
|
1.0
|
CE2
|
A:PHE34
|
4.2
|
20.1
|
1.0
|
HE1
|
A:PHE34
|
4.4
|
18.3
|
1.0
|
HB2
|
A:ARG114
|
4.4
|
20.6
|
1.0
|
CA
|
A:ARG114
|
4.4
|
14.3
|
1.0
|
HE2
|
A:PHE34
|
4.4
|
24.1
|
1.0
|
HD3
|
A:ARG114
|
4.4
|
24.6
|
1.0
|
O
|
A:ARG114
|
4.5
|
18.4
|
1.0
|
HD2
|
A:ARG114
|
4.5
|
24.6
|
1.0
|
HG3
|
A:ARG114
|
4.7
|
21.7
|
1.0
|
CD1
|
A:PHE34
|
4.8
|
14.6
|
1.0
|
CD2
|
A:PHE34
|
4.8
|
15.1
|
1.0
|
O
|
A:HOH432
|
4.9
|
23.1
|
1.0
|
NH1
|
A:ARG114
|
4.9
|
20.3
|
1.0
|
C
|
A:ARG114
|
4.9
|
17.5
|
1.0
|
|
Reference:
Z.Alsalman,
A.Roux-Gossart,
O.Maury,
E.Girard.
Design of the Second Generation of Crystallophore For Protein Crystallography To Be Published.
Page generated: Tue Jul 30 11:24:24 2024
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