Chlorine in PDB 8pfy: X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B

Enzymatic activity of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B

All present enzymatic activity of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B, PDB code: 8pfy was solved by A.Teran, G.Ferraro, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.18 / 1.19
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.62, 76.62, 37.08, 90, 90, 90
R / Rfree (%) 19.5 / 21.2

Other elements in 8pfy:

The structure of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B also contains other interesting chemical elements:

Ruthenium (Ru) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B (pdb code 8pfy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B, PDB code: 8pfy:

Chlorine binding site 1 out of 1 in 8pfy

Go back to Chlorine Binding Sites List in 8pfy
Chlorine binding site 1 out of 1 in the X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:27.9
occ:1.00
 OH A:TYR23 2.7 12.1 1.0
CE2 A:TYR23 3.4 11.2 1.0
CZ A:TYR23 3.5 10.9 1.0
CA A:GLY104 3.5 12.5 1.0
N A:GLY104 4.1 13.6 1.0
O A:HOH349 4.4 21.4 1.0
O A:HOH313 4.6 21.9 1.0
O A:ARG21 4.6 18.3 1.0
C A:GLY104 4.7 10.9 1.0
CE1 A:TYR23 4.7 10.4 1.0
CD2 A:TYR23 4.7 11.2 1.0
C A:ASN103 4.7 13.9 1.0
N A:MET105 4.8 10.4 1.0
O A:ASN103 4.9 12.9 1.0

Reference:

S.Herrero Dominguez, A.Teran, G.Ferraro, A.E.Sanchez-Pelaez, A.Merlino. Charge Effect in Protein Metalation Reactions By Diruthenium Complexes Inorg Chem Front 2023.
DOI: 10.1039/D3QI01192E
Page generated: Tue Jul 30 11:33:47 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy