Chlorine in PDB 8q2t: Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236)

The structure of Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236), PDB code: 8q2t was solved by R.K.Bedi, F.Zalesak, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.77 / 1.41
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.19, 103.7, 42.22, 90, 105.29, 90
R / Rfree (%)	22.2 / 24.1

The binding sites of Chlorine atom in the Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236) (pdb code 8q2t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236), PDB code: 8q2t:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:52.4 occ:1.00 CL01 A:IUA601 0.0 52.4 1.0 C02 A:IUA601 1.8 37.8 1.0 ND2 A:ASN364 2.6 41.1 1.0 N19 A:IUA601 2.8 38.2 1.0 N03 A:IUA601 2.8 33.2 1.0 ND2 A:ASN367 3.0 36.1 1.0 CG A:ASN364 3.2 40.9 1.0 CB A:ASN363 3.4 41.2 1.0 N A:ASN363 3.4 36.4 1.0 N A:ASN364 3.4 33.3 1.0 OD1 A:ASN364 3.5 39.5 1.0 CG A:PRO431 3.5 52.2 1.0 CA A:ASN363 3.7 37.4 1.0 OG A:SER362 3.8 35.5 1.0 O A:VAL429 3.8 46.9 1.0 C A:ASN363 3.8 36.4 1.0 CD A:PRO431 3.9 50.4 1.0 CG A:ASN367 4.1 35.9 1.0 C04 A:IUA601 4.1 36.0 1.0 CB A:ASN364 4.2 38.5 1.0 C08 A:IUA601 4.2 38.5 1.0 O A:HOH747 4.2 46.2 1.0 CA A:ASN364 4.3 37.1 1.0 C A:SER362 4.5 32.4 1.0 CB A:ASN367 4.6 32.7 1.0 CG A:ASN363 4.6 45.7 1.0 C07 A:IUA601 4.7 34.1 1.0 O A:ASN364 4.8 32.3 1.0 CA A:SER362 4.8 32.6 1.0 O A:ASN363 4.9 38.6 1.0 CB A:PRO431 4.9 53.9 1.0 CB A:SER362 4.9 32.8 1.0 N A:PRO431 4.9 51.4 1.0 OD1 A:ASN367 5.0 37.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:49.8 occ:1.00 CL01 B:IUA601 0.0 49.8 1.0 C02 B:IUA601 1.8 31.7 1.0 ND2 B:ASN364 2.7 34.4 1.0 N19 B:IUA601 2.8 33.9 1.0 N03 B:IUA601 2.8 32.9 1.0 ND2 B:ASN367 2.9 31.3 1.0 CG B:ASN364 3.0 35.7 1.0 OD1 B:ASN364 3.2 33.3 1.0 CG B:PRO431 3.3 43.2 1.0 N B:ASN364 3.4 31.1 1.0 N B:ASN363 3.5 30.4 1.0 OG B:SER362 3.5 29.2 1.0 CB B:ASN363 3.9 38.3 1.0 CG B:ASN367 3.9 28.0 1.0 CA B:ASN363 4.0 36.0 1.0 CD B:PRO431 4.0 43.6 1.0 C B:ASN363 4.0 33.0 1.0 CB B:ASN364 4.0 28.6 1.0 O B:VAL429 4.1 33.8 1.0 C04 B:IUA601 4.1 28.9 1.0 C08 B:IUA601 4.2 33.6 1.0 CA B:ASN364 4.2 32.7 1.0 CB B:ASN367 4.2 24.6 1.0 C B:SER362 4.5 27.0 1.0 O B:ASN364 4.5 30.5 1.0 CB B:PRO431 4.6 49.0 1.0 C07 B:IUA601 4.7 30.9 1.0 CB B:SER362 4.7 28.9 1.0 CA B:SER362 4.8 27.4 1.0 C B:ASN364 4.8 29.5 1.0 OD1 B:ASN367 4.9 27.6 1.0 N B:PRO431 5.0 43.5 1.0

R.K.Bedi, F.Zalesak, A.Caflisch. Crystal Structure of YTHDC1 in Complex with Compound 5 (ZA_236) To Be Published.