Chlorine in PDB 8q2u: Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308)

The structure of Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308), PDB code: 8q2u was solved by R.K.Bedi, F.Zalesak, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.69 / 1.36
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40, 103.73, 42.1, 90, 104.86, 90
R / Rfree (%)	21.8 / 23.2

The binding sites of Chlorine atom in the Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308) (pdb code 8q2u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308), PDB code: 8q2u:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:46.5 occ:1.00 CL01 A:IUH601 0.0 46.5 1.0 C02 A:IUH601 1.8 34.8 1.0 ND2 A:ASN364 2.6 41.5 1.0 N19 A:IUH601 2.8 37.7 1.0 N03 A:IUH601 2.8 35.3 1.0 ND2 A:ASN367 3.1 37.0 1.0 CG A:ASN364 3.4 32.0 1.0 O A:VAL429 3.5 48.0 1.0 N A:ASN363 3.5 33.8 1.0 CB A:ASN363 3.5 40.1 1.0 N A:ASN364 3.6 29.3 1.0 OG A:SER362 3.7 30.6 1.0 CD A:PRO431 3.8 54.7 1.0 CA A:ASN363 3.9 34.8 1.0 CG A:ASN367 3.9 36.0 1.0 C A:ASN363 4.1 33.1 1.0 OD1 A:ASN364 4.1 36.9 1.0 C04 A:IUH601 4.1 30.7 1.0 CG A:PRO431 4.1 54.1 1.0 C08 A:IUH601 4.2 34.0 1.0 CB A:ASN364 4.2 33.6 1.0 CB A:ASN367 4.3 31.9 1.0 CA A:ASN364 4.5 32.5 1.0 C A:SER362 4.6 29.2 1.0 C07 A:IUH601 4.7 34.7 1.0 CG A:ASN363 4.7 45.2 1.0 C A:VAL429 4.7 49.5 1.0 O A:ASN364 4.8 27.4 1.0 OD1 A:ASN367 4.9 35.8 1.0 CA A:SER362 4.9 29.3 1.0 N A:PRO431 4.9 56.9 1.0 CB A:SER362 4.9 30.1 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:35.0 occ:1.00 CL01 B:IUH601 0.0 35.0 1.0 C02 B:IUH601 1.8 25.3 1.0 N19 B:IUH601 2.7 24.4 1.0 N03 B:IUH601 2.8 23.2 1.0 ND2 B:ASN364 2.9 29.6 1.0 CG B:ASN364 3.2 27.6 1.0 ND2 B:ASN367 3.3 22.7 1.0 N B:ASN364 3.4 22.3 1.0 N B:ASN363 3.5 23.4 1.0 OD1 B:ASN364 3.5 27.0 1.0 OG B:SER362 3.6 22.1 1.0 CB B:ASN363 3.6 28.2 1.0 CA B:ASN363 3.8 27.1 1.0 C B:ASN363 3.9 25.4 1.0 CG B:PRO431 4.0 37.3 1.0 O B:VAL429 4.1 27.0 1.0 C08 B:IUH601 4.1 25.0 1.0 CB B:ASN364 4.1 26.1 1.0 C04 B:IUH601 4.1 21.9 1.0 CG B:ASN367 4.2 22.7 1.0 CD B:PRO431 4.2 33.8 1.0 CA B:ASN364 4.3 24.3 1.0 CB B:ASN367 4.4 20.3 1.0 C B:SER362 4.5 22.8 1.0 C07 B:IUH601 4.6 19.5 1.0 O B:ASN364 4.7 25.3 1.0 O B:HOH815 4.7 40.3 1.0 CB B:SER362 4.7 20.3 1.0 CA B:SER362 4.8 22.1 1.0 CG B:ASN363 4.8 30.2 1.0 CB B:PRO431 4.9 40.7 1.0 N B:PRO431 4.9 35.3 1.0 C B:ASN364 4.9 23.8 1.0 O B:ASN363 5.0 28.2 1.0

R.K.Bedi, F.Zalesak, A.Caflisch. Crystal Structure of YTHDC1 in Complex with Compound 6 (ZA_308) To Be Published.