Chlorine in PDB 8q4n: Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513)

The structure of Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513), PDB code: 8q4n was solved by R.K.Bedi, F.Zalesak, A.Caflisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.71 / 1.42
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	39.97, 103.04, 42.03, 90, 104.4, 90
R / Rfree (%)	19.8 / 21.4

The binding sites of Chlorine atom in the Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513) (pdb code 8q4n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513), PDB code: 8q4n:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:52.1 occ:1.00 CL20 A:JIR601 0.0 52.1 1.0 C19 A:JIR601 1.8 38.8 1.0 ND2 A:ASN364 2.7 45.3 1.0 N18 A:JIR601 2.8 41.5 1.0 N21 A:JIR601 2.8 38.1 1.0 ND2 A:ASN367 3.0 34.4 1.0 CG A:ASN364 3.3 38.2 1.0 N A:ASN363 3.4 31.8 1.0 N A:ASN364 3.5 30.6 1.0 CB A:ASN363 3.6 41.1 1.0 OG A:SER362 3.6 30.2 1.0 OD1 A:ASN364 3.7 36.0 1.0 O A:VAL429 3.8 49.4 1.0 CG A:PRO431 3.8 62.8 1.0 CA A:ASN363 3.8 35.5 1.0 CD A:PRO431 3.9 59.1 1.0 CG A:ASN367 3.9 33.1 1.0 C A:ASN363 4.0 33.9 1.0 C03 A:JIR601 4.1 36.0 1.0 C17 A:JIR601 4.2 40.7 1.0 CB A:ASN364 4.3 37.2 1.0 CB A:ASN367 4.4 30.2 1.0 C A:SER362 4.4 29.1 1.0 CA A:ASN364 4.4 31.8 1.0 C04 A:JIR601 4.7 36.9 1.0 CA A:SER362 4.7 26.4 1.0 CB A:SER362 4.8 27.5 1.0 O A:ASN364 4.8 29.2 1.0 CG A:ASN363 4.8 46.7 1.0 OD1 A:ASN367 4.9 35.8 1.0 O A:ASN363 5.0 34.8 1.0 C A:VAL429 5.0 51.4 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl601 b:38.9 occ:1.00 CL20 B:JIR601 0.0 38.9 1.0 C19 B:JIR601 1.8 29.6 1.0 N18 B:JIR601 2.8 31.6 1.0 N21 B:JIR601 2.8 31.7 1.0 ND2 B:ASN364 3.1 37.3 1.0 ND2 B:ASN367 3.3 29.7 1.0 CG B:ASN364 3.3 34.0 1.0 N B:ASN364 3.4 25.4 1.0 OD1 B:ASN364 3.4 31.6 1.0 N B:ASN363 3.5 25.2 1.0 CG B:PRO431 3.5 35.9 1.0 OG B:SER362 3.6 27.0 1.0 CB B:ASN363 3.9 34.1 1.0 CA B:ASN363 3.9 28.8 1.0 CD B:PRO431 4.0 40.2 1.0 C B:ASN363 4.0 27.5 1.0 CG B:ASN367 4.1 28.7 1.0 C03 B:JIR601 4.1 29.8 1.0 CB B:ASN364 4.1 30.3 1.0 C17 B:JIR601 4.1 32.5 1.0 O B:VAL429 4.2 35.2 1.0 CB B:ASN367 4.3 25.8 1.0 CA B:ASN364 4.3 30.0 1.0 C B:SER362 4.4 22.1 1.0 O B:ASN364 4.6 27.0 1.0 C04 B:JIR601 4.7 29.4 1.0 CA B:SER362 4.7 25.6 1.0 CB B:SER362 4.7 22.8 1.0 CG B:ASN363 4.9 39.6 1.0 C B:ASN364 4.9 25.8 1.0 CB B:PRO431 4.9 46.3 1.0

R.K.Bedi, F.Zalesak, A.Caflisch. Crystal Structure of YTHDC1 in Complex with Compound 26 (ZA_513) To Be Published.