Chlorine in PDB 8qcl: A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
Protein crystallography data
The structure of A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482, PDB code: 8qcl
was solved by
S.Banerjee,
J.N.Poulsen,
S.Mazurkewich,
A.Seveso,
J.Larsbrink,
L.Lo Leggio,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.93 /
1.84
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.282,
59.525,
87.452,
90,
101.55,
90
|
R / Rfree (%)
|
17.2 /
23.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
(pdb code 8qcl). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482, PDB code: 8qcl:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 8qcl
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Chlorine Binding Sites List in 8qcl
Chlorine binding site 1 out
of 7 in the A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl503
b:76.7
occ:1.00
|
O
|
A:ASN149
|
2.8
|
19.8
|
1.0
|
O
|
A:TYR153
|
3.2
|
19.2
|
1.0
|
CD1
|
A:LEU158
|
3.2
|
52.8
|
1.0
|
N
|
A:TYR153
|
3.4
|
18.4
|
1.0
|
OH
|
A:TYR129
|
3.4
|
21.0
|
1.0
|
NE2
|
A:GLN127
|
3.5
|
27.2
|
1.0
|
O
|
A:TYR150
|
3.6
|
22.8
|
1.0
|
CA
|
A:TYR150
|
3.6
|
22.1
|
1.0
|
C
|
A:TYR150
|
3.7
|
20.9
|
1.0
|
OE1
|
A:GLN127
|
3.8
|
35.8
|
1.0
|
C
|
A:ASN149
|
3.8
|
19.8
|
1.0
|
CB
|
A:ILE152
|
3.9
|
18.7
|
1.0
|
N
|
A:ILE152
|
4.0
|
17.0
|
1.0
|
C
|
A:TYR153
|
4.0
|
21.3
|
1.0
|
CD
|
A:GLN127
|
4.0
|
28.1
|
1.0
|
CA
|
A:TYR153
|
4.0
|
20.5
|
1.0
|
CB
|
A:TYR153
|
4.1
|
20.9
|
1.0
|
N
|
A:TYR150
|
4.2
|
20.0
|
1.0
|
C
|
A:ILE152
|
4.2
|
18.7
|
1.0
|
CA
|
A:ILE152
|
4.3
|
18.1
|
1.0
|
CB
|
A:ASP155
|
4.3
|
32.2
|
1.0
|
CZ
|
A:TYR129
|
4.4
|
18.1
|
1.0
|
CE2
|
A:TYR129
|
4.4
|
17.8
|
1.0
|
N
|
A:THR151
|
4.5
|
19.2
|
1.0
|
CG
|
A:LEU158
|
4.7
|
51.2
|
1.0
|
CG2
|
A:ILE152
|
4.7
|
18.9
|
1.0
|
CG1
|
A:ILE152
|
4.8
|
19.7
|
1.0
|
CB
|
A:TYR150
|
4.9
|
24.0
|
1.0
|
C
|
A:THR151
|
4.9
|
17.0
|
1.0
|
N
|
A:ASP155
|
5.0
|
30.9
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 8qcl
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Chlorine Binding Sites List in 8qcl
Chlorine binding site 2 out
of 7 in the A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl504
b:62.1
occ:1.00
|
N
|
A:GLY378
|
3.3
|
32.5
|
1.0
|
CD2
|
A:LEU377
|
3.8
|
32.0
|
1.0
|
CD
|
A:PRO396
|
4.0
|
22.2
|
1.0
|
CA
|
A:LEU377
|
4.0
|
31.0
|
1.0
|
CA
|
A:GLY378
|
4.1
|
32.9
|
1.0
|
C
|
A:LEU377
|
4.1
|
31.5
|
1.0
|
CB
|
A:LEU377
|
4.3
|
31.2
|
1.0
|
O
|
A:ASN394
|
4.4
|
28.6
|
1.0
|
CA
|
A:GLY395
|
4.6
|
23.3
|
1.0
|
CG
|
A:LEU377
|
4.7
|
34.0
|
1.0
|
N
|
A:PRO396
|
4.7
|
22.3
|
1.0
|
C
|
A:GLY395
|
4.9
|
22.2
|
1.0
|
CG
|
A:PRO396
|
4.9
|
21.8
|
1.0
|
|
Chlorine binding site 3 out
of 7 in 8qcl
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Chlorine Binding Sites List in 8qcl
Chlorine binding site 3 out
of 7 in the A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl505
b:28.8
occ:1.00
|
O
|
A:HOH753
|
3.0
|
3.0
|
0.5
|
NE1
|
A:TRP181
|
3.2
|
18.7
|
1.0
|
N
|
A:PHE146
|
3.3
|
18.2
|
1.0
|
CB
|
A:SER145
|
3.6
|
16.4
|
1.0
|
CE
|
A:MET177
|
3.6
|
32.3
|
1.0
|
CA
|
A:SER145
|
3.7
|
15.8
|
1.0
|
CZ2
|
A:TRP181
|
3.9
|
18.0
|
1.0
|
CD2
|
A:PHE146
|
3.9
|
21.3
|
1.0
|
CE2
|
A:TRP181
|
3.9
|
18.2
|
1.0
|
CB
|
A:PHE146
|
4.0
|
19.8
|
1.0
|
C
|
A:SER145
|
4.1
|
16.9
|
1.0
|
O
|
A:HOH753
|
4.2
|
10.6
|
0.5
|
CA
|
A:PHE146
|
4.3
|
19.5
|
1.0
|
CG
|
A:MET177
|
4.3
|
28.3
|
1.0
|
CD1
|
A:TRP181
|
4.4
|
17.9
|
1.0
|
CG
|
A:PHE146
|
4.5
|
20.3
|
1.0
|
O
|
A:HOH645
|
4.5
|
20.2
|
1.0
|
CB
|
A:MET177
|
4.6
|
27.1
|
1.0
|
N
|
A:MET147
|
4.6
|
21.0
|
1.0
|
OG
|
A:SER145
|
4.8
|
17.5
|
1.0
|
SD
|
A:MET177
|
4.8
|
30.8
|
1.0
|
CE2
|
A:PHE146
|
4.9
|
20.4
|
1.0
|
C
|
A:PHE146
|
5.0
|
20.2
|
1.0
|
|
Chlorine binding site 4 out
of 7 in 8qcl
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Chlorine Binding Sites List in 8qcl
Chlorine binding site 4 out
of 7 in the A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl503
b:77.5
occ:1.00
|
O
|
B:PRO122
|
2.6
|
33.8
|
1.0
|
OG1
|
B:THR116
|
2.8
|
45.7
|
1.0
|
N
|
B:THR116
|
3.0
|
37.5
|
1.0
|
O
|
B:ASP118
|
3.1
|
73.3
|
1.0
|
N
|
B:LEU115
|
3.2
|
34.6
|
1.0
|
OE1
|
B:GLN114
|
3.3
|
57.6
|
1.0
|
C
|
B:GLY121
|
3.5
|
50.1
|
1.0
|
O
|
B:THR116
|
3.5
|
44.9
|
1.0
|
O
|
B:GLY121
|
3.6
|
43.9
|
1.0
|
C
|
B:PRO122
|
3.6
|
36.2
|
1.0
|
CB
|
B:THR116
|
3.7
|
40.2
|
1.0
|
CA
|
B:THR116
|
3.7
|
41.7
|
1.0
|
CB
|
B:GLN114
|
3.7
|
42.2
|
1.0
|
CA
|
B:GLN114
|
3.8
|
39.4
|
1.0
|
N
|
B:PRO122
|
3.8
|
43.6
|
1.0
|
CD
|
B:GLN114
|
3.9
|
53.1
|
1.0
|
CA
|
B:GLY121
|
3.9
|
53.7
|
1.0
|
C
|
B:THR116
|
3.9
|
47.7
|
1.0
|
C
|
B:GLN114
|
3.9
|
37.0
|
1.0
|
C
|
B:LEU115
|
3.9
|
37.2
|
1.0
|
CG2
|
B:THR116
|
4.0
|
39.0
|
1.0
|
CA
|
B:LEU115
|
4.1
|
35.0
|
1.0
|
N
|
B:GLY121
|
4.3
|
60.0
|
1.0
|
C
|
B:ASP118
|
4.3
|
69.2
|
1.0
|
CA
|
B:PRO122
|
4.3
|
39.6
|
1.0
|
CG
|
B:GLN114
|
4.3
|
47.9
|
1.0
|
CD
|
B:PRO122
|
4.4
|
42.9
|
1.0
|
CB
|
B:LEU115
|
4.5
|
34.5
|
1.0
|
N
|
B:HIS123
|
4.6
|
32.8
|
1.0
|
NE2
|
B:GLN114
|
4.7
|
56.5
|
1.0
|
O
|
B:HOH629
|
4.7
|
46.5
|
1.0
|
N
|
B:ASP118
|
4.8
|
65.6
|
1.0
|
CG
|
B:PRO122
|
4.9
|
42.3
|
1.0
|
CA
|
B:HIS123
|
4.9
|
31.9
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 8qcl
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Chlorine Binding Sites List in 8qcl
Chlorine binding site 5 out
of 7 in the A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl504
b:72.5
occ:1.00
|
O
|
B:HOH642
|
2.8
|
23.1
|
1.0
|
CA
|
B:GLY317
|
3.2
|
16.5
|
1.0
|
N
|
B:GLY317
|
3.3
|
17.5
|
1.0
|
O
|
A:HOH730
|
3.3
|
30.9
|
1.0
|
NH1
|
A:ARG325
|
3.4
|
23.9
|
1.0
|
CE2
|
B:PHE224
|
3.8
|
41.8
|
1.0
|
O
|
B:HOH628
|
3.9
|
23.8
|
1.0
|
CZ
|
B:PHE224
|
3.9
|
40.4
|
1.0
|
C
|
B:CYS316
|
4.1
|
19.1
|
1.0
|
CE
|
B:LYS320
|
4.3
|
25.6
|
1.0
|
NZ
|
B:LYS320
|
4.4
|
26.8
|
1.0
|
O
|
A:HOH668
|
4.5
|
22.5
|
1.0
|
CZ
|
A:ARG325
|
4.5
|
21.8
|
1.0
|
CE2
|
B:PHE209
|
4.6
|
33.9
|
1.0
|
O
|
B:PRO312
|
4.6
|
17.0
|
1.0
|
O
|
B:PHE315
|
4.6
|
17.4
|
1.0
|
O
|
B:CYS316
|
4.7
|
17.3
|
1.0
|
CD
|
B:LYS320
|
4.7
|
25.2
|
1.0
|
C
|
B:GLY317
|
4.7
|
15.9
|
1.0
|
CA
|
B:CYS316
|
4.9
|
19.3
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 8qcl
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Chlorine Binding Sites List in 8qcl
Chlorine binding site 6 out
of 7 in the A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl505
b:32.0
occ:1.00
|
O
|
B:HOH706
|
3.0
|
35.1
|
1.0
|
NZ
|
B:LYS327
|
3.3
|
36.5
|
1.0
|
CD
|
B:LYS327
|
3.3
|
38.1
|
1.0
|
N
|
B:THR44
|
3.5
|
27.1
|
1.0
|
NE
|
B:ARG297
|
3.5
|
18.2
|
1.0
|
O
|
B:THR44
|
3.6
|
25.2
|
1.0
|
CA
|
B:TYR43
|
3.7
|
23.9
|
1.0
|
CD
|
B:ARG297
|
3.7
|
18.1
|
1.0
|
CB
|
B:TYR43
|
3.8
|
22.4
|
1.0
|
CE
|
B:LYS327
|
3.8
|
37.9
|
1.0
|
C
|
B:TYR43
|
4.1
|
25.3
|
1.0
|
CG
|
B:ARG297
|
4.2
|
17.9
|
1.0
|
CA
|
B:LYS327
|
4.3
|
26.1
|
1.0
|
O
|
B:LYS327
|
4.4
|
23.2
|
1.0
|
C
|
B:THR44
|
4.4
|
26.5
|
1.0
|
CA
|
B:THR44
|
4.4
|
28.8
|
1.0
|
CG
|
B:LYS327
|
4.5
|
35.4
|
1.0
|
CZ
|
B:ARG297
|
4.6
|
17.8
|
1.0
|
CB
|
B:THR44
|
4.7
|
32.3
|
1.0
|
C
|
B:LYS327
|
4.9
|
23.4
|
1.0
|
CB
|
B:LYS327
|
4.9
|
31.0
|
1.0
|
NH2
|
B:ARG297
|
5.0
|
17.7
|
1.0
|
O
|
B:GLN42
|
5.0
|
22.9
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 8qcl
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Chlorine Binding Sites List in 8qcl
Chlorine binding site 7 out
of 7 in the A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl506
b:49.6
occ:1.00
|
O
|
B:LYS82
|
3.4
|
23.0
|
1.0
|
N
|
B:PRO84
|
3.5
|
29.1
|
1.0
|
C
|
B:ALA83
|
3.5
|
28.1
|
1.0
|
NE2
|
B:GLN229
|
3.7
|
21.3
|
1.0
|
CD
|
B:PRO84
|
3.9
|
29.3
|
1.0
|
O
|
B:ALA83
|
3.9
|
29.2
|
1.0
|
C
|
B:LYS82
|
3.9
|
24.2
|
1.0
|
CA
|
B:ALA83
|
4.0
|
26.3
|
1.0
|
CA
|
B:PRO84
|
4.0
|
29.6
|
1.0
|
CG
|
B:GLN229
|
4.1
|
19.8
|
1.0
|
CG
|
B:PRO84
|
4.1
|
29.0
|
1.0
|
CD
|
B:GLN229
|
4.2
|
20.7
|
1.0
|
N
|
B:ALA83
|
4.2
|
24.0
|
1.0
|
NE1
|
B:TRP230
|
4.4
|
19.3
|
1.0
|
CB
|
B:LYS82
|
4.5
|
25.7
|
1.0
|
CD1
|
B:TRP230
|
4.5
|
19.6
|
1.0
|
CB
|
B:PRO84
|
4.6
|
28.4
|
1.0
|
CB
|
B:GLN229
|
4.7
|
19.3
|
1.0
|
CE2
|
B:TRP230
|
4.8
|
18.8
|
1.0
|
CA
|
B:LYS82
|
4.9
|
24.4
|
1.0
|
O
|
B:HOH694
|
5.0
|
33.2
|
1.0
|
CG
|
B:TRP230
|
5.0
|
18.0
|
1.0
|
|
Reference:
S.Banerjee,
J.N.Poulsen,
S.Mazurkewich,
A.Seveso,
J.Larsbrink,
L.Lo Leggio.
A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482 To Be Published.
Page generated: Tue Jul 30 11:54:31 2024
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