Chlorine in PDB 8qf5: Complex Between N-Lobe of Arc and Nanobody E5

The structure of Complex Between N-Lobe of Arc and Nanobody E5, PDB code: 8qf5 was solved by J.M.Godoy Munoz, P.Kursula, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.83 / 1.50
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.5, 99.48, 138.43, 90, 90, 90
R / Rfree (%)	14.5 / 19.3

The structure of Complex Between N-Lobe of Arc and Nanobody E5 also contains other interesting chemical elements:

Zinc

(Zn)

5 atoms

The binding sites of Chlorine atom in the Complex Between N-Lobe of Arc and Nanobody E5 (pdb code 8qf5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Complex Between N-Lobe of Arc and Nanobody E5, PDB code: 8qf5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Complex Between N-Lobe of Arc and Nanobody E5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Complex Between N-Lobe of Arc and Nanobody E5 within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl302 b:39.1 occ:1.00 HZ1 H:LYS257 2.3 55.4 1.0 HE1 H:TRP253 2.5 40.7 1.0 H B:SER234 2.5 42.0 1.0 HB2 B:TYR237 2.8 42.7 1.0 HB2 B:SER234 3.0 52.1 1.0 HD3 H:LYS257 3.2 48.6 1.0 O B:HOH425 3.2 39.2 1.0 NZ H:LYS257 3.2 46.2 1.0 H B:TYR237 3.3 40.8 1.0 N B:SER234 3.3 35.0 1.0 NE1 H:TRP253 3.3 34.0 1.0 HE2 H:PHE256 3.4 51.0 1.0 HB3 B:TYR237 3.6 42.7 1.0 CB B:TYR237 3.6 35.7 1.0 HZ3 H:LYS257 3.6 55.4 1.0 HZ2 H:LYS257 3.7 55.4 1.0 HA3 B:GLY233 3.7 39.3 1.0 HB2 B:GLU236 3.7 53.2 1.0 CB B:SER234 3.8 43.5 1.0 HE2 H:LYS257 3.8 50.9 1.0 CE H:LYS257 3.9 42.5 1.0 CD H:LYS257 3.9 40.5 1.0 CA B:SER234 4.0 34.6 1.0 N B:TYR237 4.0 34.1 1.0 HA2 B:GLY233 4.0 39.3 1.0 HD1 H:TRP253 4.0 37.3 1.0 O B:SER234 4.0 32.2 1.0 CD1 H:TRP253 4.1 31.1 1.0 CA B:GLY233 4.2 32.8 1.0 OG B:SER234 4.2 46.1 1.0 CE2 H:PHE256 4.2 42.5 1.0 C B:GLY233 4.3 33.3 1.0 C B:SER234 4.3 33.1 1.0 HD2 H:LYS257 4.3 48.6 1.0 OE1 B:GLU236 4.3 60.8 1.0 HZ2 H:TRP253 4.4 42.4 1.0 CE2 H:TRP253 4.4 34.1 1.0 CA B:TYR237 4.4 30.8 1.0 HG B:SER234 4.5 55.3 1.0 HD2 H:PHE256 4.5 44.7 1.0 O H:HOH416 4.5 38.9 1.0 HB3 B:SER234 4.6 52.1 1.0 H B:GLU236 4.6 43.4 1.0 CG B:TYR237 4.6 29.9 1.0 CB B:GLU236 4.7 44.4 1.0 O H:HOH418 4.8 54.4 1.0 CZ2 H:TRP253 4.8 35.4 1.0 HE3 H:LYS257 4.8 50.9 1.0 HA B:TYR237 4.8 36.9 1.0 CD2 H:PHE256 4.8 37.3 1.0 HD2 B:TYR237 4.8 37.2 1.0 HA B:SER234 4.9 41.5 1.0 HD1 H:TYR274 4.9 38.5 1.0 C B:GLU236 4.9 34.8 1.0 N B:GLU236 5.0 36.2 1.0

Chlorine binding site 2 out of 2 in the Complex Between N-Lobe of Arc and Nanobody E5


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Complex Between N-Lobe of Arc and Nanobody E5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl302 b:46.8 occ:1.00 H B:ASP216 2.4 43.3 1.0 H B:GLU215 2.4 47.3 1.0 HD2 B:PHE214 3.0 41.3 1.0 HA B:PHE214 3.1 37.6 1.0 N B:ASP216 3.2 36.1 1.0 N B:GLU215 3.2 39.5 1.0 HB3 B:ASP216 3.3 45.6 1.0 HE21 A:GLN46 3.6 85.9 1.0 HB2 B:GLU215 3.6 55.8 1.0 NE2 A:GLN46 3.6 71.7 1.0 HB2 B:ASP216 3.7 45.6 1.0 HE22 A:GLN46 3.7 85.9 1.0 HB3 B:PHE214 3.7 38.9 1.0 HB2 B:GLU219 3.7 44.5 1.0 CB B:ASP216 3.8 38.1 1.0 CD2 B:PHE214 3.8 34.5 1.0 CA B:PHE214 3.9 31.3 1.0 CA B:GLU215 4.0 39.7 1.0 C B:GLU215 4.0 35.0 1.0 C B:PHE214 4.0 32.6 1.0 CA B:ASP216 4.1 35.7 1.0 CB B:PHE214 4.2 32.4 1.0 HG3 B:GLU219 4.2 56.6 1.0 CD A:GLN46 4.2 74.9 1.0 O B:HOH448 4.2 57.5 1.0 CB B:GLU215 4.3 46.6 1.0 HB3 B:GLU219 4.4 44.5 1.0 HG3 A:GLN46 4.4 77.7 1.0 CB B:GLU219 4.4 37.1 1.0 CG B:PHE214 4.5 29.9 1.0 HG2 B:GLU215 4.5 61.8 1.0 O B:ASP216 4.6 32.2 1.0 OE1 A:GLN46 4.7 68.4 1.0 O B:ILE213 4.7 37.7 1.0 HE2 B:PHE214 4.7 44.3 1.0 CE2 B:PHE214 4.7 36.9 1.0 HA B:ASP216 4.8 42.8 1.0 CG B:GLU219 4.8 47.2 1.0 C B:ASP216 4.9 33.1 1.0 HA B:GLU215 4.9 47.5 1.0 CG A:GLN46 4.9 64.8 1.0 CG B:GLU215 5.0 51.6 1.0

J.M.Godoy Munoz, P.Kursula. Complex Between N-Lobe of Arc and Nanobody E5 To Be Published.