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Chlorine in PDB 8r30: Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408

Enzymatic activity of Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408

All present enzymatic activity of Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408:
3.5.2.6;

Protein crystallography data

The structure of Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408, PDB code: 8r30 was solved by C.L.Tooke, P.Hinchliffe, J.Spencer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.72 / 0.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.252, 45.506, 117.416, 90, 90, 90
R / Rfree (%) 12.4 / 13.7

Other elements in 8r30:

The structure of Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408 also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408 (pdb code 8r30). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408, PDB code: 8r30:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8r30

Go back to Chlorine Binding Sites List in 8r30
Chlorine binding site 1 out of 2 in the Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:10.3
occ:1.00
H A:ALA227 2.4 9.2 1.0
HA A:PRO226 3.0 8.6 1.0
O A:HOH618 3.2 13.8 1.0
N A:ALA227 3.2 9.3 1.0
HB1 A:ALA227 3.4 12.6 1.0
HB3 A:PRO226 3.5 9.6 1.0
HB3 A:ALA227 3.7 12.6 1.0
CA A:PRO226 3.7 8.7 1.0
CB A:ALA227 3.9 12.2 1.0
C A:PRO226 4.0 8.7 1.0
CB A:PRO226 4.1 9.7 1.0
CA A:ALA227 4.2 10.7 1.0
H A:SER228 4.5 11.2 1.0
O A:HOH611 4.6 31.1 1.0
O A:HOH669 4.7 41.5 1.0
HB2 A:PRO226 4.7 9.6 1.0
HA A:ALA227 4.8 10.4 1.0
HB2 A:ALA227 4.8 12.6 1.0
HG3 A:PRO226 4.9 9.5 1.0

Chlorine binding site 2 out of 2 in 8r30

Go back to Chlorine Binding Sites List in 8r30
Chlorine binding site 2 out of 2 in the Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl307

b:8.9
occ:1.00
HG1 A:THR235 2.3 7.0 1.0
H6 A:XR3301 2.4 6.7 0.9
O A:HOH443 2.8 10.5 0.4
HB A:THR235 3.0 6.4 1.0
OG1 A:THR235 3.0 7.0 1.0
HA2 A:GLY236 3.1 6.1 1.0
H16 A:XR3301 3.2 8.2 0.9
N6 A:XR3301 3.2 6.9 0.9
O A:HOH443 3.3 9.4 0.6
OG A:SER237 3.3 12.0 0.8
HB3 A:SER237 3.4 10.8 0.2
CB A:THR235 3.5 6.6 1.0
H A:SER237 3.6 7.2 0.8
HB2 A:SER237 3.6 10.8 0.2
C16 A:XR3301 3.6 8.4 0.9
OG A:SER237 3.6 10.9 0.0
CA A:GLY236 3.6 6.2 1.0
N A:GLY236 3.6 5.5 1.0
H A:SER237 3.6 7.2 0.0
HB3 A:SER237 3.6 10.8 0.0
C A:GLY236 3.6 6.2 1.0
HB2 A:SER237 3.6 10.8 0.8
N A:SER237 3.6 6.6 0.8
N A:SER237 3.6 7.2 0.0
H A:SER237 3.6 7.2 0.2
N A:SER237 3.7 7.2 0.2
O3 A:XR3301 3.7 6.9 0.9
C A:THR235 3.7 5.2 1.0
H5B A:XR3301 3.8 6.7 0.9
HG A:SER237 3.8 11.7 0.0
O1 A:XR3301 3.8 9.7 0.9
H A:GLY236 3.9 5.4 1.0
CB A:SER237 3.9 10.3 0.2
O17 A:XR3301 3.9 8.4 0.9
CB A:SER237 3.9 10.6 0.8
C8 A:XR3301 4.0 8.0 0.9
S7 A:XR3301 4.0 7.5 0.9
C5 A:XR3301 4.0 6.8 0.9
HG A:SER237 4.0 11.7 0.8
CB A:SER237 4.0 10.2 0.0
O A:THR235 4.0 5.9 1.0
HB2 A:SER70 4.1 5.6 1.0
HH21 A:ARG274 4.1 13.2 0.6
HG A:SER130 4.1 6.5 1.0
O A:GLY236 4.2 9.1 1.0
CA A:THR235 4.3 5.4 1.0
HG1 A:THR216 4.3 7.1 1.0
B2 A:XR3301 4.3 6.3 0.9
C15 A:XR3301 4.3 8.6 0.9
C4 A:XR3301 4.4 6.6 0.9
CA A:SER237 4.4 7.5 0.8
CA A:SER237 4.4 8.2 0.2
CA A:SER237 4.4 8.3 0.0
HA3 A:GLY236 4.5 6.1 1.0
H15 A:XR3301 4.5 8.6 0.9
H1 A:XR3301 4.6 9.5 0.9
HB A:THR216 4.6 7.7 1.0
HG23 A:THR235 4.6 7.1 1.0
HE A:ARG274 4.6 10.4 0.6
HZ2 A:LYS234 4.6 6.5 1.0
HZ1 A:LYS234 4.7 6.5 1.0
CG2 A:THR235 4.7 7.1 1.0
OG A:SER130 4.8 6.5 1.0
HB3 A:SER237 4.8 10.8 0.8
O A:HOH521 4.8 7.3 1.0
H5A A:XR3301 4.9 6.7 0.9
O A:HOH435 4.9 21.4 0.6
HA A:THR235 4.9 5.3 1.0
HB2 A:SER237 4.9 10.8 0.0
HB2 A:SER130 4.9 6.9 1.0
CB A:SER70 4.9 5.7 1.0
NH2 A:ARG274 5.0 11.4 0.6
C9 A:XR3301 5.0 8.1 0.9
NZ A:LYS234 5.0 6.4 1.0
HA A:SER237 5.0 8.3 0.2
HA A:SER237 5.0 8.3 0.8

Reference:

C.L.Tooke, P.Hinchliffe, J.Spencer. Structure of Ctx-M-15 Complexed with Benzoxaborole Ak-408 To Be Published.
Page generated: Wed Nov 27 17:06:55 2024

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