Chlorine in PDB 8re3: Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans

Protein crystallography data

The structure of Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans, PDB code: 8re3 was solved by B.A.Salgueiro, K.Frade, C.Frazao, P.Matias, E.Moe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.74 / 1.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 82.09, 97.697, 116.037, 90, 90, 90
R / Rfree (%) 16.7 / 19.5

Other elements in 8re3:

The structure of Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Iron (Fe) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans (pdb code 8re3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans, PDB code: 8re3:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8re3

Go back to Chlorine Binding Sites List in 8re3
Chlorine binding site 1 out of 2 in the Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:22.9
occ:1.00
H A:ARG35 2.3 19.9 1.0
HH11 A:ARG349 2.5 20.0 1.0
HA A:GLU34 3.1 22.4 1.0
O A:HOH821 3.1 15.8 1.0
N A:ARG35 3.1 16.4 1.0
HD3 A:ARG349 3.2 20.9 1.0
HB2 A:ARG35 3.2 21.7 1.0
HD22 A:ASN193 3.3 19.9 1.0
NH1 A:ARG349 3.3 16.5 1.0
HB3 A:ARG35 3.3 21.7 1.0
HD21 A:ASN193 3.4 19.9 1.0
HD2 A:ARG349 3.5 20.9 1.0
HH12 A:ARG349 3.5 20.0 1.0
CB A:ARG35 3.6 17.9 1.0
O A:ARG348 3.6 16.0 1.0
ND2 A:ASN193 3.7 16.5 1.0
HB3 A:GLU34 3.7 26.6 1.0
HA A:ARG349 3.7 16.7 1.0
O A:HOH845 3.7 31.1 1.0
CD A:ARG349 3.8 17.2 1.0
CA A:GLU34 3.8 18.5 1.0
HG2 A:GLU34 3.9 39.8 1.0
C A:GLU34 4.0 16.0 1.0
CA A:ARG35 4.0 16.0 1.0
CB A:GLU34 4.1 22.1 1.0
HA2 A:GLY190 4.1 26.0 1.0
CZ A:ARG349 4.3 12.3 1.0
HA3 A:GLY190 4.3 26.0 1.0
NE A:ARG349 4.5 14.9 1.0
CG A:GLU34 4.5 33.0 1.0
CA A:ARG349 4.6 13.8 1.0
CA A:GLY190 4.7 21.6 1.0
O A:GLY190 4.7 19.8 1.0
HA A:ARG35 4.7 19.4 1.0
H A:ALA350 4.7 16.2 1.0
O A:HOH814 4.7 22.4 1.0
C A:ARG348 4.7 15.8 1.0
O A:ARG35 4.8 15.3 1.0
HD3 A:ARG35 4.9 20.9 1.0
O A:HOH707 4.9 26.0 1.0
HG3 A:GLU34 4.9 39.8 1.0
HB3 A:ARG349 4.9 17.6 1.0
C A:ARG35 5.0 13.2 1.0
CG A:ASN193 5.0 16.6 1.0
CG A:ARG349 5.0 16.1 1.0
O A:ARG33 5.0 16.2 1.0

Chlorine binding site 2 out of 2 in 8re3

Go back to Chlorine Binding Sites List in 8re3
Chlorine binding site 2 out of 2 in the Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure Determination of Dye-Decolorizing Peroxidase (Dyp) Mutant M190G From Deinoccoccus Radiodurans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl504

b:25.8
occ:1.00
H B:ARG35 2.3 21.1 1.0
HH11 B:ARG349 2.5 18.9 1.0
O B:HOH831 3.0 17.9 1.0
HA B:GLU34 3.1 23.9 1.0
HD3 B:ARG349 3.2 19.4 1.0
N B:ARG35 3.2 17.4 1.0
NH1 B:ARG349 3.3 15.6 1.0
HD22 B:ASN193 3.3 23.5 1.0
HB2 B:ARG35 3.3 22.7 1.0
HD21 B:ASN193 3.3 23.5 1.0
HB3 B:ARG35 3.4 22.7 1.0
HD2 B:ARG349 3.5 19.4 1.0
HH12 B:ARG349 3.6 18.9 1.0
HB3 B:GLU34 3.6 27.4 1.0
O B:ARG348 3.6 19.3 1.0
HA B:ARG349 3.6 12.8 1.0
ND2 B:ASN193 3.7 19.4 1.0
CB B:ARG35 3.7 18.8 1.0
CD B:ARG349 3.8 16.1 1.0
CA B:GLU34 3.8 19.8 1.0
HG2 B:GLU34 4.0 39.0 1.0
C B:GLU34 4.0 17.8 1.0
CA B:ARG35 4.1 17.6 1.0
CB B:GLU34 4.1 22.7 1.0
HA2 B:GLY190 4.1 25.3 1.0
CZ B:ARG349 4.3 16.3 1.0
HA3 B:GLY190 4.3 25.3 1.0
NE B:ARG349 4.5 15.4 1.0
CG B:GLU34 4.6 32.4 1.0
CA B:ARG349 4.6 10.5 1.0
O B:HOH792 4.6 26.8 1.0
H B:ALA350 4.7 18.4 1.0
CA B:GLY190 4.7 20.9 1.0
O B:GLY190 4.7 20.6 1.0
HA B:ARG35 4.7 21.2 1.0
C B:ARG348 4.7 17.8 1.0
O B:HOH617 4.7 32.2 1.0
HD3 B:ARG35 4.9 19.8 1.0
HB3 B:ARG349 4.9 16.8 1.0
O B:ARG35 4.9 18.1 1.0
CG B:ARG349 5.0 15.5 1.0
CG B:ASN193 5.0 16.5 1.0
O B:ARG33 5.0 14.5 1.0

Reference:

K.Frade, C.M.Silveira, B.A.Salgueiro, S.Mendes, L.O.Martins, C.Frazao, S.Todorovic, E.Moe. Biochemical, Biophysical, and Structural Analysis of An Unusual Dyp From the Extremophile Deinococcus Radiodurans. Molecules V. 29 2024.
ISSN: ESSN 1420-3049
PubMed: 38257271
DOI: 10.3390/MOLECULES29020358
Page generated: Tue Jul 30 12:13:29 2024

Last articles

W in 8QLN
W in 8RJA
V in 8WTN
Te in 8QLN
Re in 9GHX
Rb in 8Z5C
Ni in 9C0T
Ni in 9C0S
Ni in 9GP1
Ni in 9FYO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy