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Chlorine in PDB 8s2v: Ssx Structure of Lysozyme Grown in Microfluidic Droplets

Enzymatic activity of Ssx Structure of Lysozyme Grown in Microfluidic Droplets

All present enzymatic activity of Ssx Structure of Lysozyme Grown in Microfluidic Droplets:
3.2.1.17;

Protein crystallography data

The structure of Ssx Structure of Lysozyme Grown in Microfluidic Droplets, PDB code: 8s2v was solved by J.Stubbs, I.Tews, M.Maly, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.85 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.9, 78.9, 37.9, 90, 90, 90
R / Rfree (%) 14.6 / 19

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ssx Structure of Lysozyme Grown in Microfluidic Droplets (pdb code 8s2v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Ssx Structure of Lysozyme Grown in Microfluidic Droplets, PDB code: 8s2v:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8s2v

Go back to Chlorine Binding Sites List in 8s2v
Chlorine binding site 1 out of 2 in the Ssx Structure of Lysozyme Grown in Microfluidic Droplets


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ssx Structure of Lysozyme Grown in Microfluidic Droplets within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:33.9
occ:1.00
OH A:TYR23 2.9 25.2 1.0
CZ A:TYR23 3.6 23.7 1.0
CE2 A:TYR23 3.6 24.6 1.0
CA A:GLY104 4.1 25.3 1.0
O A:ARG21 4.6 30.9 1.0
N A:GLY104 4.7 23.9 1.0
O A:HOH305 4.7 33.9 1.0
CE1 A:TYR23 4.9 24.5 1.0
CD2 A:TYR23 4.9 23.4 1.0

Chlorine binding site 2 out of 2 in 8s2v

Go back to Chlorine Binding Sites List in 8s2v
Chlorine binding site 2 out of 2 in the Ssx Structure of Lysozyme Grown in Microfluidic Droplets


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ssx Structure of Lysozyme Grown in Microfluidic Droplets within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:45.5
occ:1.00
O A:HOH335 3.0 28.5 1.0
O A:THR69 3.2 32.4 1.0
N A:THR69 3.2 30.8 1.0
OD1 A:ASN65 3.4 34.7 1.0
N A:ARG68 3.6 28.4 0.5
C A:THR69 3.6 32.9 1.0
N A:ARG68 3.6 29.1 0.5
CA A:GLY67 3.7 31.6 1.0
C A:GLY67 3.7 31.8 1.0
N A:GLY67 3.7 26.0 1.0
OG A:SER72 3.7 31.7 1.0
CA A:THR69 3.9 31.2 1.0
O A:HOH346 4.0 35.4 1.0
C A:ARG68 4.2 29.8 0.5
OD1 A:ASP66 4.2 25.1 1.0
C A:ARG68 4.3 32.1 0.5
CB A:THR69 4.3 27.4 1.0
CA A:ARG68 4.3 30.1 0.5
N A:PRO70 4.4 34.2 1.0
O A:GLY67 4.4 34.0 1.0
CA A:ARG68 4.4 31.2 0.5
CG A:ASN65 4.6 33.2 1.0
O A:HOH301 4.8 18.8 1.0
CA A:PRO70 4.8 38.9 1.0
N A:ASP66 4.8 25.1 1.0
C A:ASP66 4.8 25.6 1.0
OG1 A:THR69 4.9 25.5 1.0

Reference:

J.Stubbs, I.Tews, M.Maly. Droplet Microfluidics For Time-Resolved Serial Crystallography Biorxiv 2024.
ISSN: ISSN 2692-8205
DOI: 10.1101/2024.01.12.575388
Page generated: Tue Jul 30 12:20:43 2024

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