Chlorine in PDB 8sfg: Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
Protein crystallography data
The structure of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6, PDB code: 8sfg
was solved by
G.Minasov,
L.Shuvalova,
M.Rosas-Lemus,
A.Herrera,
K.J.F.Satchell,
Centerfor Structural Biology Of Infectious Diseases (Csbid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.87 /
2.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
61.381,
160.661,
71.793,
90,
101.28,
90
|
R / Rfree (%)
|
18.9 /
23
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
23;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
(pdb code 8sfg). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 23 binding sites of Chlorine where determined in the
Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6, PDB code: 8sfg:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 1 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_01.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3606
b:88.9
occ:1.00
|
NZ
|
A:LYS3255
|
3.6
|
82.8
|
1.0
|
CE
|
A:LYS3255
|
3.8
|
77.8
|
1.0
|
CG2
|
B:THR3391
|
4.6
|
66.4
|
1.0
|
|
Chlorine binding site 2 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 2 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_02.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3607
b:71.0
occ:1.00
|
N
|
A:PHE3560
|
3.8
|
81.3
|
1.0
|
N
|
A:VAL3559
|
3.9
|
70.5
|
1.0
|
CB
|
A:VAL3559
|
4.4
|
73.1
|
1.0
|
CD2
|
A:PHE3560
|
4.4
|
75.3
|
1.0
|
CB
|
A:PHE3560
|
4.5
|
82.6
|
1.0
|
CA
|
A:VAL3559
|
4.5
|
74.8
|
1.0
|
O
|
A:PHE3560
|
4.6
|
94.1
|
1.0
|
CA
|
A:PHE3560
|
4.7
|
85.9
|
1.0
|
C
|
A:VAL3559
|
4.7
|
79.0
|
1.0
|
CE
|
A:LYS3379
|
4.7
|
61.0
|
1.0
|
CG
|
A:LYS3379
|
4.8
|
57.9
|
1.0
|
CA
|
A:PRO3558
|
4.8
|
71.3
|
1.0
|
C
|
A:PRO3558
|
4.8
|
71.0
|
1.0
|
CG
|
A:PHE3560
|
4.9
|
79.6
|
1.0
|
|
Chlorine binding site 3 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 3 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_03.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3608
b:98.5
occ:1.00
|
ND2
|
A:ASN3415
|
3.2
|
109.6
|
1.0
|
CE1
|
A:HIS3418
|
3.7
|
116.1
|
1.0
|
NH2
|
A:ARG3529
|
3.8
|
81.4
|
1.0
|
NH1
|
A:ARG3529
|
3.8
|
84.0
|
1.0
|
NE2
|
A:HIS3418
|
4.0
|
118.9
|
1.0
|
CZ
|
A:ARG3529
|
4.2
|
82.9
|
1.0
|
NH2
|
A:ARG3350
|
4.3
|
134.8
|
1.0
|
CG
|
A:ASN3415
|
4.5
|
108.9
|
1.0
|
CB
|
A:MSE3417
|
4.5
|
97.7
|
1.0
|
ND1
|
A:HIS3418
|
4.7
|
116.9
|
1.0
|
CG
|
A:MSE3417
|
4.8
|
95.9
|
1.0
|
|
Chlorine binding site 4 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 4 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_04.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3609
b:72.1
occ:1.00
|
OG1
|
A:THR3436
|
3.3
|
61.9
|
1.0
|
OE1
|
A:GLU3524
|
3.6
|
106.8
|
1.0
|
OD1
|
A:ASN3438
|
4.1
|
84.7
|
1.0
|
CB
|
A:ASN3438
|
4.1
|
74.8
|
1.0
|
CG2
|
A:THR3436
|
4.3
|
68.6
|
1.0
|
CB
|
A:THR3436
|
4.3
|
65.5
|
1.0
|
CG
|
A:ASN3438
|
4.6
|
79.1
|
1.0
|
CD
|
A:GLU3524
|
4.6
|
107.0
|
1.0
|
N
|
A:GLY3439
|
4.7
|
64.8
|
1.0
|
OE2
|
A:GLU3524
|
5.0
|
111.4
|
1.0
|
|
Chlorine binding site 5 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 5 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_05.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3610
b:81.9
occ:1.00
|
NH1
|
A:ARG3317
|
3.2
|
85.7
|
1.0
|
NH2
|
A:ARG3317
|
3.8
|
82.3
|
1.0
|
CZ
|
A:ARG3317
|
3.9
|
82.9
|
1.0
|
NE
|
A:ARG3314
|
3.9
|
82.7
|
1.0
|
CG
|
A:ARG3314
|
4.1
|
69.3
|
1.0
|
CD
|
A:ARG3314
|
4.2
|
76.0
|
1.0
|
ND2
|
B:ASN3307
|
4.3
|
75.1
|
1.0
|
CB
|
A:ARG3314
|
4.9
|
60.9
|
1.0
|
|
Chlorine binding site 6 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 6 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_06.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3611
b:79.4
occ:1.00
|
N
|
A:ILE3487
|
3.0
|
49.2
|
1.0
|
O
|
A:HOH3704
|
3.0
|
51.7
|
1.0
|
NZ
|
B:LYS3308
|
3.3
|
58.1
|
1.0
|
CA
|
A:GLY3486
|
3.4
|
54.0
|
1.0
|
C
|
A:GLY3486
|
3.7
|
50.8
|
1.0
|
CE
|
B:LYS3308
|
3.8
|
54.7
|
1.0
|
CD1
|
A:LEU3377
|
3.8
|
57.3
|
1.0
|
CA
|
A:ILE3487
|
4.0
|
48.5
|
1.0
|
O
|
A:PRO3335
|
4.1
|
55.6
|
1.0
|
CB
|
A:ILE3487
|
4.1
|
47.9
|
1.0
|
O
|
A:ILE3487
|
4.2
|
51.7
|
1.0
|
CA
|
A:PRO3335
|
4.2
|
55.1
|
1.0
|
CG1
|
A:ILE3487
|
4.3
|
50.4
|
1.0
|
C
|
A:PRO3335
|
4.5
|
55.3
|
1.0
|
O
|
A:ALA3334
|
4.5
|
53.5
|
1.0
|
O
|
A:LEU3337
|
4.6
|
60.4
|
1.0
|
C
|
A:ILE3487
|
4.6
|
46.1
|
1.0
|
O
|
A:ALA3485
|
4.7
|
55.1
|
1.0
|
N
|
A:GLY3486
|
4.7
|
54.8
|
1.0
|
O1
|
B:SO43604
|
4.8
|
76.8
|
0.5
|
O
|
A:GLY3486
|
4.9
|
52.8
|
1.0
|
|
Chlorine binding site 7 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 7 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_07.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3612
b:84.1
occ:1.00
|
N
|
A:ALA3286
|
3.5
|
106.6
|
1.0
|
CB
|
A:ALA3286
|
3.9
|
102.5
|
1.0
|
CA
|
A:ALA3286
|
4.3
|
100.2
|
1.0
|
C
|
A:SER3285
|
4.3
|
106.7
|
1.0
|
CA
|
A:SER3285
|
4.3
|
111.7
|
1.0
|
CB
|
A:SER3285
|
4.6
|
114.3
|
1.0
|
|
Chlorine binding site 8 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 8 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_08.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3613
b:53.5
occ:0.50
|
CL
|
A:CL3613
|
0.0
|
53.5
|
0.5
|
CL
|
A:CL3613
|
2.6
|
61.6
|
0.5
|
N
|
A:ASP3395
|
3.4
|
69.7
|
1.0
|
CB
|
A:SER3394
|
3.7
|
68.2
|
1.0
|
CG
|
A:ASP3395
|
3.8
|
77.5
|
1.0
|
CA
|
A:SER3394
|
3.9
|
65.2
|
1.0
|
CB
|
A:ASP3395
|
4.0
|
75.6
|
1.0
|
OD1
|
A:ASP3395
|
4.1
|
77.2
|
1.0
|
OD2
|
A:ASP3395
|
4.1
|
81.7
|
1.0
|
C
|
A:SER3394
|
4.2
|
66.1
|
1.0
|
CA
|
A:ASP3395
|
4.3
|
70.9
|
1.0
|
OG
|
A:SER3394
|
4.9
|
67.6
|
1.0
|
N
|
A:SER3396
|
5.0
|
74.9
|
1.0
|
|
Chlorine binding site 9 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 9 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_09.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl3613
b:61.6
occ:0.50
|
CL
|
A:CL3613
|
0.0
|
61.6
|
0.5
|
CL
|
A:CL3613
|
2.6
|
53.5
|
0.5
|
OG
|
A:SER3396
|
3.2
|
86.9
|
1.0
|
N
|
A:SER3396
|
3.8
|
74.9
|
1.0
|
CB
|
A:SER3394
|
3.8
|
68.2
|
1.0
|
N
|
A:ASP3395
|
3.9
|
69.7
|
1.0
|
CB
|
A:SER3396
|
4.1
|
79.0
|
1.0
|
CB
|
A:ASP3395
|
4.3
|
75.6
|
1.0
|
OG
|
A:SER3394
|
4.3
|
67.6
|
1.0
|
CA
|
A:ASP3395
|
4.5
|
70.9
|
1.0
|
CA
|
A:SER3396
|
4.6
|
76.5
|
1.0
|
C
|
A:SER3394
|
4.6
|
66.1
|
1.0
|
C
|
A:ASP3395
|
4.6
|
70.8
|
1.0
|
CA
|
A:SER3394
|
4.7
|
65.2
|
1.0
|
CE
|
B:LYS3248
|
4.9
|
114.6
|
1.0
|
NZ
|
B:LYS3248
|
4.9
|
116.5
|
1.0
|
CG
|
A:ASP3395
|
4.9
|
77.5
|
1.0
|
|
Chlorine binding site 10 out
of 23 in 8sfg
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Chlorine Binding Sites List in 8sfg
Chlorine binding site 10 out
of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_10.jpg) Mono view
![](/pictures/CL/pdb/sf/8sfg-CL-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl3606
b:67.6
occ:1.00
|
N
|
B:PHE3560
|
3.4
|
72.6
|
1.0
|
N
|
B:VAL3559
|
3.5
|
59.0
|
1.0
|
O
|
B:PHE3560
|
3.6
|
79.0
|
1.0
|
CA
|
B:PHE3560
|
4.2
|
78.7
|
1.0
|
CA
|
B:PRO3558
|
4.3
|
55.6
|
1.0
|
CA
|
B:VAL3559
|
4.3
|
63.1
|
1.0
|
CB
|
B:PHE3560
|
4.3
|
78.6
|
1.0
|
C
|
B:VAL3559
|
4.3
|
68.5
|
1.0
|
C
|
B:PHE3560
|
4.3
|
82.8
|
1.0
|
C
|
B:PRO3558
|
4.3
|
55.9
|
1.0
|
CB
|
B:VAL3559
|
4.4
|
61.1
|
1.0
|
CB
|
B:PRO3558
|
4.6
|
56.0
|
1.0
|
CD2
|
B:PHE3560
|
4.6
|
77.6
|
1.0
|
CE
|
B:LYS3379
|
4.9
|
51.5
|
1.0
|
CG
|
B:PHE3560
|
4.9
|
78.2
|
1.0
|
|
Reference:
G.Minasov,
L.Shuvalova,
M.Rosas-Lemus,
A.Herrera,
K.J.F.Satchell,
Center For Structural Biology Of Infectious Diseases (Csbid).
Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6. To Be Published.
Page generated: Tue Jul 30 12:24:44 2024
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