Chlorine in PDB 8sfg: Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6

Protein crystallography data

The structure of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6, PDB code: 8sfg was solved by G.Minasov, L.Shuvalova, M.Rosas-Lemus, A.Herrera, K.J.F.Satchell, Centerfor Structural Biology Of Infectious Diseases (Csbid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.87 / 2.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.381, 160.661, 71.793, 90, 101.28, 90
R / Rfree (%) 18.9 / 23

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 23;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 (pdb code 8sfg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 23 binding sites of Chlorine where determined in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6, PDB code: 8sfg:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 23 in 8sfg

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Chlorine binding site 1 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3606

b:88.9
occ:1.00
NZ A:LYS3255 3.6 82.8 1.0
CE A:LYS3255 3.8 77.8 1.0
CG2 B:THR3391 4.6 66.4 1.0

Chlorine binding site 2 out of 23 in 8sfg

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Chlorine binding site 2 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3607

b:71.0
occ:1.00
N A:PHE3560 3.8 81.3 1.0
N A:VAL3559 3.9 70.5 1.0
CB A:VAL3559 4.4 73.1 1.0
CD2 A:PHE3560 4.4 75.3 1.0
CB A:PHE3560 4.5 82.6 1.0
CA A:VAL3559 4.5 74.8 1.0
O A:PHE3560 4.6 94.1 1.0
CA A:PHE3560 4.7 85.9 1.0
C A:VAL3559 4.7 79.0 1.0
CE A:LYS3379 4.7 61.0 1.0
CG A:LYS3379 4.8 57.9 1.0
CA A:PRO3558 4.8 71.3 1.0
C A:PRO3558 4.8 71.0 1.0
CG A:PHE3560 4.9 79.6 1.0

Chlorine binding site 3 out of 23 in 8sfg

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Chlorine binding site 3 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3608

b:98.5
occ:1.00
ND2 A:ASN3415 3.2 109.6 1.0
CE1 A:HIS3418 3.7 116.1 1.0
NH2 A:ARG3529 3.8 81.4 1.0
NH1 A:ARG3529 3.8 84.0 1.0
NE2 A:HIS3418 4.0 118.9 1.0
CZ A:ARG3529 4.2 82.9 1.0
NH2 A:ARG3350 4.3 134.8 1.0
CG A:ASN3415 4.5 108.9 1.0
CB A:MSE3417 4.5 97.7 1.0
ND1 A:HIS3418 4.7 116.9 1.0
CG A:MSE3417 4.8 95.9 1.0

Chlorine binding site 4 out of 23 in 8sfg

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Chlorine binding site 4 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3609

b:72.1
occ:1.00
OG1 A:THR3436 3.3 61.9 1.0
OE1 A:GLU3524 3.6 106.8 1.0
OD1 A:ASN3438 4.1 84.7 1.0
CB A:ASN3438 4.1 74.8 1.0
CG2 A:THR3436 4.3 68.6 1.0
CB A:THR3436 4.3 65.5 1.0
CG A:ASN3438 4.6 79.1 1.0
CD A:GLU3524 4.6 107.0 1.0
N A:GLY3439 4.7 64.8 1.0
OE2 A:GLU3524 5.0 111.4 1.0

Chlorine binding site 5 out of 23 in 8sfg

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Chlorine binding site 5 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3610

b:81.9
occ:1.00
NH1 A:ARG3317 3.2 85.7 1.0
NH2 A:ARG3317 3.8 82.3 1.0
CZ A:ARG3317 3.9 82.9 1.0
NE A:ARG3314 3.9 82.7 1.0
CG A:ARG3314 4.1 69.3 1.0
CD A:ARG3314 4.2 76.0 1.0
ND2 B:ASN3307 4.3 75.1 1.0
CB A:ARG3314 4.9 60.9 1.0

Chlorine binding site 6 out of 23 in 8sfg

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Chlorine binding site 6 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3611

b:79.4
occ:1.00
N A:ILE3487 3.0 49.2 1.0
O A:HOH3704 3.0 51.7 1.0
NZ B:LYS3308 3.3 58.1 1.0
CA A:GLY3486 3.4 54.0 1.0
C A:GLY3486 3.7 50.8 1.0
CE B:LYS3308 3.8 54.7 1.0
CD1 A:LEU3377 3.8 57.3 1.0
CA A:ILE3487 4.0 48.5 1.0
O A:PRO3335 4.1 55.6 1.0
CB A:ILE3487 4.1 47.9 1.0
O A:ILE3487 4.2 51.7 1.0
CA A:PRO3335 4.2 55.1 1.0
CG1 A:ILE3487 4.3 50.4 1.0
C A:PRO3335 4.5 55.3 1.0
O A:ALA3334 4.5 53.5 1.0
O A:LEU3337 4.6 60.4 1.0
C A:ILE3487 4.6 46.1 1.0
O A:ALA3485 4.7 55.1 1.0
N A:GLY3486 4.7 54.8 1.0
O1 B:SO43604 4.8 76.8 0.5
O A:GLY3486 4.9 52.8 1.0

Chlorine binding site 7 out of 23 in 8sfg

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Chlorine binding site 7 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3612

b:84.1
occ:1.00
N A:ALA3286 3.5 106.6 1.0
CB A:ALA3286 3.9 102.5 1.0
CA A:ALA3286 4.3 100.2 1.0
C A:SER3285 4.3 106.7 1.0
CA A:SER3285 4.3 111.7 1.0
CB A:SER3285 4.6 114.3 1.0

Chlorine binding site 8 out of 23 in 8sfg

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Chlorine binding site 8 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3613

b:53.5
occ:0.50
CL A:CL3613 0.0 53.5 0.5
CL A:CL3613 2.6 61.6 0.5
N A:ASP3395 3.4 69.7 1.0
CB A:SER3394 3.7 68.2 1.0
CG A:ASP3395 3.8 77.5 1.0
CA A:SER3394 3.9 65.2 1.0
CB A:ASP3395 4.0 75.6 1.0
OD1 A:ASP3395 4.1 77.2 1.0
OD2 A:ASP3395 4.1 81.7 1.0
C A:SER3394 4.2 66.1 1.0
CA A:ASP3395 4.3 70.9 1.0
OG A:SER3394 4.9 67.6 1.0
N A:SER3396 5.0 74.9 1.0

Chlorine binding site 9 out of 23 in 8sfg

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Chlorine binding site 9 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3613

b:61.6
occ:0.50
CL A:CL3613 0.0 61.6 0.5
CL A:CL3613 2.6 53.5 0.5
OG A:SER3396 3.2 86.9 1.0
N A:SER3396 3.8 74.9 1.0
CB A:SER3394 3.8 68.2 1.0
N A:ASP3395 3.9 69.7 1.0
CB A:SER3396 4.1 79.0 1.0
CB A:ASP3395 4.3 75.6 1.0
OG A:SER3394 4.3 67.6 1.0
CA A:ASP3395 4.5 70.9 1.0
CA A:SER3396 4.6 76.5 1.0
C A:SER3394 4.6 66.1 1.0
C A:ASP3395 4.6 70.8 1.0
CA A:SER3394 4.7 65.2 1.0
CE B:LYS3248 4.9 114.6 1.0
NZ B:LYS3248 4.9 116.5 1.0
CG A:ASP3395 4.9 77.5 1.0

Chlorine binding site 10 out of 23 in 8sfg

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Chlorine binding site 10 out of 23 in the Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl3606

b:67.6
occ:1.00
N B:PHE3560 3.4 72.6 1.0
N B:VAL3559 3.5 59.0 1.0
O B:PHE3560 3.6 79.0 1.0
CA B:PHE3560 4.2 78.7 1.0
CA B:PRO3558 4.3 55.6 1.0
CA B:VAL3559 4.3 63.1 1.0
CB B:PHE3560 4.3 78.6 1.0
C B:VAL3559 4.3 68.5 1.0
C B:PHE3560 4.3 82.8 1.0
C B:PRO3558 4.3 55.9 1.0
CB B:VAL3559 4.4 61.1 1.0
CB B:PRO3558 4.6 56.0 1.0
CD2 B:PHE3560 4.6 77.6 1.0
CE B:LYS3379 4.9 51.5 1.0
CG B:PHE3560 4.9 78.2 1.0

Reference:

G.Minasov, L.Shuvalova, M.Rosas-Lemus, A.Herrera, K.J.F.Satchell, Center For Structural Biology Of Infectious Diseases (Csbid). Crystal Structure of the Open Unbound Catalytically Inactive Makes Caterpillars Floppy-Like (Mcf) Effector From Vibrio Vulnificus CMCP6. To Be Published.
Page generated: Tue Jul 30 12:24:44 2024

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