Chlorine in PDB 8sl9: Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73
Protein crystallography data
The structure of Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73, PDB code: 8sl9
was solved by
G.X.Shaw,
G.Shi,
S.Cherry,
D.Needle,
J.E.Tropea,
D.S.Waugh,
X.Ji,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.10 /
1.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.847,
73.977,
69.557,
90,
94.87,
90
|
R / Rfree (%)
|
16.4 /
17.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73
(pdb code 8sl9). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73, PDB code: 8sl9:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 8sl9
Go back to
Chlorine Binding Sites List in 8sl9
Chlorine binding site 1 out
of 3 in the Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl524
b:23.9
occ:1.00
|
H
|
A:LEU167
|
2.1
|
10.7
|
1.0
|
HA
|
A:SER38
|
2.8
|
9.7
|
0.1
|
HB
|
A:THR166
|
2.8
|
14.1
|
1.0
|
HA
|
A:SER38
|
2.9
|
9.5
|
0.9
|
O
|
A:ALA37
|
2.9
|
9.4
|
1.0
|
HB2
|
A:LEU167
|
2.9
|
11.7
|
1.0
|
CL
|
A:CL526
|
2.9
|
45.1
|
1.0
|
N
|
A:LEU167
|
2.9
|
8.9
|
1.0
|
HA
|
A:THR166
|
3.2
|
10.7
|
1.0
|
HG
|
A:LEU167
|
3.4
|
12.3
|
1.0
|
HD12
|
A:LEU167
|
3.4
|
17.2
|
1.0
|
CB
|
A:LEU167
|
3.6
|
9.8
|
1.0
|
CB
|
A:THR166
|
3.6
|
11.7
|
1.0
|
CA
|
A:THR166
|
3.6
|
8.9
|
1.0
|
CA
|
A:SER38
|
3.6
|
8.1
|
0.1
|
CA
|
A:SER38
|
3.7
|
7.9
|
0.9
|
HG
|
A:LEU39
|
3.7
|
9.2
|
1.0
|
C
|
A:THR166
|
3.7
|
8.4
|
1.0
|
CA
|
A:LEU167
|
3.8
|
9.7
|
1.0
|
C
|
A:ALA37
|
3.8
|
8.5
|
1.0
|
CG
|
A:LEU167
|
3.8
|
10.2
|
1.0
|
H
|
A:LEU39
|
4.0
|
9.7
|
1.0
|
N
|
A:SER38
|
4.0
|
9.2
|
0.9
|
CD1
|
A:LEU167
|
4.1
|
14.3
|
1.0
|
N
|
A:SER38
|
4.1
|
9.3
|
0.1
|
C
|
A:SER38
|
4.2
|
7.5
|
0.1
|
C
|
A:SER38
|
4.2
|
7.5
|
0.9
|
N
|
A:LEU39
|
4.3
|
8.1
|
1.0
|
O
|
A:HOH661
|
4.4
|
10.0
|
1.0
|
HD11
|
A:LEU167
|
4.4
|
17.2
|
1.0
|
HZ3
|
A:LYS36
|
4.4
|
58.0
|
1.0
|
OG1
|
A:THR166
|
4.4
|
13.3
|
1.0
|
HB3
|
A:LEU167
|
4.4
|
11.7
|
1.0
|
H
|
A:ALA168
|
4.5
|
11.2
|
1.0
|
O
|
A:HOH650
|
4.5
|
29.6
|
1.0
|
HA
|
A:LEU167
|
4.5
|
11.6
|
1.0
|
O
|
A:HOH928
|
4.5
|
30.5
|
1.0
|
C
|
A:LEU167
|
4.6
|
8.3
|
1.0
|
HG22
|
A:THR166
|
4.6
|
19.2
|
1.0
|
CG2
|
A:THR166
|
4.6
|
16.0
|
1.0
|
HB3
|
A:LYS36
|
4.7
|
11.9
|
1.0
|
CG
|
A:LEU39
|
4.7
|
7.7
|
1.0
|
CB
|
A:SER38
|
4.8
|
9.7
|
0.1
|
H
|
A:SER38
|
4.8
|
11.1
|
0.9
|
N
|
A:ALA168
|
4.8
|
9.4
|
1.0
|
HB2
|
A:LYS36
|
4.8
|
11.9
|
1.0
|
H
|
A:SER38
|
4.8
|
11.1
|
0.1
|
HG21
|
A:THR166
|
4.9
|
19.2
|
1.0
|
O
|
A:SER38
|
4.9
|
8.1
|
0.9
|
CB
|
A:SER38
|
4.9
|
9.7
|
0.9
|
HB3
|
A:SER38
|
4.9
|
11.6
|
0.1
|
HD13
|
A:LEU167
|
4.9
|
17.2
|
1.0
|
O
|
A:SER38
|
4.9
|
8.2
|
0.1
|
OG
|
A:SER38
|
4.9
|
12.9
|
0.1
|
O
|
A:GLN165
|
4.9
|
10.0
|
1.0
|
O
|
A:THR166
|
4.9
|
8.1
|
1.0
|
HG
|
A:SER38
|
4.9
|
15.5
|
0.9
|
O
|
A:LYS36
|
5.0
|
11.2
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 8sl9
Go back to
Chlorine Binding Sites List in 8sl9
Chlorine binding site 2 out
of 3 in the Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl525
b:37.6
occ:1.00
|
H
|
A:LEU150
|
2.4
|
14.9
|
1.0
|
HB2
|
A:LEU150
|
3.0
|
14.1
|
1.0
|
O
|
A:TRP140
|
3.1
|
13.8
|
1.0
|
N
|
A:LEU150
|
3.2
|
12.4
|
1.0
|
HG
|
A:LEU150
|
3.2
|
14.5
|
1.0
|
HA
|
A:ASP149
|
3.3
|
16.5
|
1.0
|
CB
|
A:LEU150
|
3.6
|
11.8
|
1.0
|
HD12
|
A:LEU150
|
3.7
|
15.4
|
1.0
|
O
|
A:TRP148
|
3.7
|
13.2
|
1.0
|
HA
|
A:HIS141
|
3.7
|
13.0
|
1.0
|
CG
|
A:LEU150
|
3.8
|
12.1
|
1.0
|
CE1
|
A:HIS141
|
4.0
|
19.9
|
1.0
|
O
|
A:HOH908
|
4.0
|
34.2
|
1.0
|
CA
|
A:LEU150
|
4.0
|
14.1
|
1.0
|
H
|
A:ASN151
|
4.0
|
16.2
|
1.0
|
ND1
|
A:HIS141
|
4.1
|
19.1
|
1.0
|
NE2
|
A:HIS141
|
4.1
|
15.8
|
1.0
|
C
|
A:TRP140
|
4.1
|
13.7
|
1.0
|
HE1
|
A:HIS141
|
4.1
|
23.8
|
1.0
|
C
|
A:ASP149
|
4.1
|
12.2
|
1.0
|
CA
|
A:ASP149
|
4.1
|
13.7
|
1.0
|
CD1
|
A:LEU150
|
4.2
|
12.8
|
1.0
|
CG
|
A:HIS141
|
4.3
|
12.9
|
1.0
|
CD2
|
A:HIS141
|
4.4
|
14.2
|
1.0
|
HD1
|
A:HIS141
|
4.4
|
22.9
|
1.0
|
HD21
|
A:LEU134
|
4.4
|
17.1
|
1.0
|
HD22
|
A:LEU134
|
4.5
|
17.1
|
1.0
|
HB3
|
A:LEU150
|
4.5
|
14.1
|
1.0
|
HD21
|
A:ASN151
|
4.5
|
46.6
|
1.0
|
CA
|
A:HIS141
|
4.5
|
10.8
|
1.0
|
OD1
|
A:ASP149
|
4.6
|
18.6
|
1.0
|
N
|
A:ASN151
|
4.6
|
13.5
|
1.0
|
O
|
A:HOH743
|
4.6
|
13.7
|
1.0
|
C
|
A:TRP148
|
4.7
|
12.0
|
1.0
|
HD11
|
A:LEU150
|
4.7
|
15.4
|
1.0
|
N
|
A:HIS141
|
4.7
|
13.2
|
1.0
|
ND2
|
A:ASN151
|
4.7
|
38.9
|
1.0
|
C
|
A:LEU150
|
4.8
|
10.6
|
1.0
|
HA
|
A:LEU150
|
4.8
|
16.9
|
1.0
|
HD22
|
A:ASN151
|
4.8
|
46.6
|
1.0
|
HD2
|
A:HIS141
|
4.8
|
17.0
|
1.0
|
O
|
A:GLY139
|
4.9
|
21.6
|
1.0
|
CD2
|
A:LEU134
|
4.9
|
14.3
|
1.0
|
N
|
A:ASP149
|
4.9
|
12.2
|
1.0
|
HA2
|
A:GLY139
|
5.0
|
21.5
|
1.0
|
C
|
A:GLY139
|
5.0
|
26.7
|
1.0
|
N
|
A:TRP140
|
5.0
|
15.1
|
1.0
|
HD13
|
A:LEU150
|
5.0
|
15.4
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 8sl9
Go back to
Chlorine Binding Sites List in 8sl9
Chlorine binding site 3 out
of 3 in the Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl526
b:45.1
occ:1.00
|
HZ3
|
A:LYS36
|
2.4
|
58.0
|
1.0
|
HZ1
|
A:LYS36
|
2.9
|
58.0
|
1.0
|
O
|
A:HOH928
|
2.9
|
30.5
|
1.0
|
CL
|
A:CL524
|
2.9
|
23.9
|
1.0
|
NZ
|
A:LYS36
|
3.0
|
48.4
|
1.0
|
HB2
|
A:LEU167
|
3.1
|
11.7
|
1.0
|
H
|
A:LEU167
|
3.1
|
10.7
|
1.0
|
HZ2
|
A:LYS36
|
3.2
|
58.0
|
1.0
|
C
|
A:LEU167
|
3.6
|
8.3
|
1.0
|
N
|
A:ALA168
|
3.6
|
9.4
|
1.0
|
HB
|
A:THR166
|
3.6
|
14.1
|
1.0
|
H
|
A:ALA168
|
3.7
|
11.2
|
1.0
|
N
|
A:LEU167
|
3.7
|
8.9
|
1.0
|
HB2
|
A:LYS36
|
3.7
|
11.9
|
1.0
|
HA
|
A:ALA168
|
3.8
|
13.0
|
1.0
|
CB
|
A:LEU167
|
3.8
|
9.8
|
1.0
|
CA
|
A:LEU167
|
3.9
|
9.7
|
1.0
|
O
|
A:LEU167
|
4.1
|
11.1
|
1.0
|
HB2
|
A:ALA168
|
4.1
|
16.1
|
1.0
|
CA
|
A:ALA168
|
4.2
|
10.8
|
1.0
|
HB3
|
A:LEU167
|
4.3
|
11.7
|
1.0
|
CE
|
A:LYS36
|
4.3
|
28.8
|
1.0
|
OG1
|
A:THR166
|
4.3
|
13.3
|
1.0
|
CB
|
A:THR166
|
4.4
|
11.7
|
1.0
|
HB3
|
A:LYS36
|
4.5
|
11.9
|
1.0
|
HE2
|
A:LYS36
|
4.5
|
34.5
|
1.0
|
CB
|
A:LYS36
|
4.5
|
9.9
|
1.0
|
HD2
|
A:LYS36
|
4.6
|
18.8
|
1.0
|
CB
|
A:ALA168
|
4.7
|
13.4
|
1.0
|
HD12
|
A:LEU167
|
4.7
|
17.2
|
1.0
|
O
|
A:ALA37
|
4.7
|
9.4
|
1.0
|
C
|
A:THR166
|
4.8
|
8.4
|
1.0
|
O
|
A:LYS36
|
4.8
|
11.2
|
1.0
|
HA
|
A:LEU167
|
4.8
|
11.6
|
1.0
|
O
|
A:HOH860
|
4.9
|
19.4
|
1.0
|
CD
|
A:LYS36
|
4.9
|
15.7
|
1.0
|
|
Reference:
G.X.Shaw,
G.Shi,
S.Cherry,
D.Needle,
J.E.Tropea,
D.S.Waugh,
X.Ji.
Crystal Structure of Francisella Tularensis Hppk-Dhps in Complex with Hppk Inhibitor Hp-73 To Be Published.
Page generated: Tue Jul 30 12:29:28 2024
|