Chlorine in PDB 8so8: Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa
Protein crystallography data
The structure of Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa, PDB code: 8so8
was solved by
G.X.Shaw,
S.Kakar,
X.Ji,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.87 /
2.61
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
122.421,
122.421,
187.795,
90,
90,
90
|
R / Rfree (%)
|
22.4 /
27.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa
(pdb code 8so8). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa, PDB code: 8so8:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 8so8
Go back to
Chlorine Binding Sites List in 8so8
Chlorine binding site 1 out
of 5 in the Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1011
b:86.5
occ:1.00
|
N
|
A:LYS828
|
3.6
|
55.2
|
1.0
|
CA
|
A:PRO827
|
3.7
|
70.4
|
1.0
|
CB
|
A:PRO827
|
3.9
|
74.2
|
1.0
|
C
|
A:PRO827
|
4.1
|
59.8
|
1.0
|
CB
|
A:LYS828
|
4.5
|
45.6
|
1.0
|
CA
|
A:LYS828
|
4.7
|
56.8
|
1.0
|
N
|
A:PRO827
|
5.0
|
71.4
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 8so8
Go back to
Chlorine Binding Sites List in 8so8
Chlorine binding site 2 out
of 5 in the Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1012
b:92.4
occ:1.00
|
OE2
|
A:GLU209
|
2.9
|
105.3
|
1.0
|
OG1
|
A:THR210
|
3.4
|
83.5
|
1.0
|
CD
|
A:GLU209
|
3.9
|
113.5
|
1.0
|
CB
|
A:PRO208
|
4.0
|
64.5
|
1.0
|
CG2
|
A:THR210
|
4.1
|
82.9
|
1.0
|
CG
|
A:GLU209
|
4.1
|
108.8
|
1.0
|
N
|
A:THR210
|
4.3
|
67.5
|
1.0
|
N
|
A:GLU209
|
4.3
|
75.1
|
1.0
|
CB
|
A:THR210
|
4.3
|
80.6
|
1.0
|
CA
|
A:PRO208
|
4.6
|
67.9
|
1.0
|
C
|
A:PRO208
|
4.6
|
74.1
|
1.0
|
CA
|
A:THR210
|
5.0
|
75.7
|
1.0
|
OE1
|
A:GLU209
|
5.0
|
99.0
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 8so8
Go back to
Chlorine Binding Sites List in 8so8
Chlorine binding site 3 out
of 5 in the Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1013
b:84.3
occ:1.00
|
O
|
A:HOH1195
|
3.1
|
71.6
|
1.0
|
O
|
A:ASP280
|
3.4
|
53.3
|
1.0
|
CD
|
A:PRO208
|
3.9
|
62.0
|
1.0
|
CG
|
A:PRO208
|
4.0
|
68.4
|
1.0
|
O
|
A:GLU281
|
4.1
|
73.7
|
1.0
|
CD2
|
A:LEU256
|
4.4
|
71.7
|
1.0
|
CB
|
A:LEU256
|
4.4
|
62.9
|
1.0
|
CG1
|
A:VAL279
|
4.5
|
42.7
|
1.0
|
N
|
A:PRO208
|
4.5
|
57.0
|
1.0
|
CG2
|
A:ILE206
|
4.6
|
60.9
|
1.0
|
C
|
A:ASP280
|
4.7
|
54.5
|
1.0
|
C
|
A:GLU281
|
4.8
|
70.6
|
1.0
|
O
|
A:ILE206
|
4.9
|
48.5
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 8so8
Go back to
Chlorine Binding Sites List in 8so8
Chlorine binding site 4 out
of 5 in the Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1014
b:89.0
occ:1.00
|
CB
|
A:HIS634
|
3.8
|
64.0
|
1.0
|
N
|
A:CYS636
|
4.0
|
53.0
|
1.0
|
CE
|
A:LYS678
|
4.1
|
72.2
|
1.0
|
N
|
A:THR635
|
4.1
|
66.7
|
1.0
|
CB
|
A:CYS636
|
4.1
|
80.2
|
1.0
|
CG
|
A:HIS634
|
4.3
|
70.7
|
1.0
|
CD2
|
A:HIS634
|
4.3
|
66.8
|
1.0
|
CA
|
A:CYS636
|
4.5
|
59.3
|
1.0
|
CG2
|
A:THR635
|
4.5
|
60.6
|
1.0
|
CA
|
A:HIS634
|
4.7
|
65.8
|
1.0
|
NZ
|
A:LYS678
|
4.7
|
88.7
|
1.0
|
C
|
A:THR635
|
4.8
|
58.3
|
1.0
|
C
|
A:HIS634
|
4.8
|
66.1
|
1.0
|
CA
|
A:THR635
|
4.9
|
59.0
|
1.0
|
O
|
A:HOH1205
|
5.0
|
60.2
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 8so8
Go back to
Chlorine Binding Sites List in 8so8
Chlorine binding site 5 out
of 5 in the Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1015
b:92.8
occ:1.00
|
NH2
|
A:ARG131
|
3.5
|
88.2
|
1.0
|
ND2
|
A:ASN862
|
3.8
|
85.1
|
1.0
|
CB
|
A:ALA127
|
3.8
|
67.1
|
1.0
|
CB
|
A:ASP124
|
3.8
|
90.7
|
1.0
|
CA
|
A:ASP124
|
3.9
|
91.6
|
1.0
|
O
|
A:ASP124
|
4.5
|
98.6
|
1.0
|
O
|
A:MET123
|
4.7
|
91.3
|
1.0
|
C
|
A:ASP124
|
4.7
|
93.5
|
1.0
|
N
|
A:ASP124
|
4.8
|
93.6
|
1.0
|
CZ
|
A:ARG131
|
4.9
|
90.9
|
1.0
|
CG
|
A:ASN862
|
4.9
|
87.6
|
1.0
|
|
Reference:
G.X.Shaw,
S.Kakar,
X.Ji.
Crystal Structure of An N-Terminally Truncated Variant of Escherichia Coli Rapa To Be Published.
Page generated: Tue Jul 30 12:31:55 2024
|