Chlorine in PDB 8t28: The Crystal Structure of SRTC2 Sortase From Actinomyces Oris

Protein crystallography data

The structure of The Crystal Structure of SRTC2 Sortase From Actinomyces Oris, PDB code: 8t28 was solved by J.Osipiuk, C.Chang, H.L.Ton-That, H.Ton-That, A.Joachimiak, Center Forstructural Biology Of Infectious Diseases (Csbid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.24 / 2.10
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 90.39, 90.39, 101.704, 90, 90, 120
R / Rfree (%) 16.7 / 20.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of SRTC2 Sortase From Actinomyces Oris (pdb code 8t28). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of SRTC2 Sortase From Actinomyces Oris, PDB code: 8t28:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8t28

Go back to Chlorine Binding Sites List in 8t28
Chlorine binding site 1 out of 2 in the The Crystal Structure of SRTC2 Sortase From Actinomyces Oris


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of SRTC2 Sortase From Actinomyces Oris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:39.6
occ:0.50
N A:ALA188 3.0 36.7 1.0
N A:GLU189 3.2 43.2 1.0
CG A:GLU189 3.7 43.8 1.0
CB A:LEU187 3.8 39.2 1.0
CA A:LEU187 3.8 38.1 1.0
CA A:ALA188 3.8 38.7 1.0
C A:LEU187 3.8 37.8 1.0
CB A:GLU189 3.8 45.5 1.0
CB A:ALA188 3.9 40.1 1.0
C A:ALA188 4.0 43.8 1.0
OE2 A:GLU189 4.0 47.4 1.0
CA A:GLU189 4.2 44.8 1.0
CD A:GLU189 4.2 40.5 1.0
CD2 A:LEU187 4.2 40.8 1.0
CG A:LEU187 4.5 41.2 1.0
O A:LEU187 5.0 36.4 1.0
CD1 A:LEU187 5.0 43.1 1.0

Chlorine binding site 2 out of 2 in 8t28

Go back to Chlorine Binding Sites List in 8t28
Chlorine binding site 2 out of 2 in the The Crystal Structure of SRTC2 Sortase From Actinomyces Oris


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of SRTC2 Sortase From Actinomyces Oris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:39.8
occ:0.50
N A:GLU175 3.2 34.4 1.0
O A:HOH645 3.5 54.2 1.0
CB A:GLU175 3.8 33.8 1.0
CA A:GLY174 3.9 33.2 1.0
C A:GLY174 4.0 32.3 1.0
CG A:GLU175 4.1 33.9 1.0
CA A:GLU175 4.1 34.2 1.0
CD A:GLU175 4.5 35.1 1.0
OE1 A:GLU175 4.5 35.0 1.0
O A:HOH635 4.6 52.0 1.0
O A:GLU175 4.7 35.6 1.0
C A:GLU175 4.9 36.5 1.0

Reference:

J.Osipiuk, C.Chang, H.L.Ton-That, H.Ton-That, A.Joachimiak. The Crystal Structure of SRTC2 Sortase From Actinomyces Oris To Be Published.
Page generated: Tue Jul 30 12:42:34 2024

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