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Chlorine in PDB 8u2q: Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound)

Protein crystallography data

The structure of Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound), PDB code: 8u2q was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.53 / 2.45
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 171.286, 87.388, 99.152, 90, 104.12, 90
R / Rfree (%) 18.5 / 20.9

Other elements in 8u2q:

The structure of Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound) also contains other interesting chemical elements:

Sodium (Na) 2 atoms
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound) (pdb code 8u2q). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound), PDB code: 8u2q:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8u2q

Go back to Chlorine Binding Sites List in 8u2q
Chlorine binding site 1 out of 2 in the Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:89.3
occ:1.00
N A:ASN202 3.4 74.4 1.0
ND2 A:ASN202 3.8 82.7 1.0
CA A:GLY201 3.9 81.1 1.0
NH1 A:ARG206 4.0 76.8 1.0
CB A:ASN202 4.1 76.9 1.0
C A:GLY201 4.2 76.5 1.0
CE1 A:PHE275 4.2 68.7 1.0
NH2 A:ARG206 4.2 72.9 1.0
CA A:ASN202 4.4 70.3 1.0
CD1 A:PHE275 4.4 66.0 1.0
CD2 A:PHE205 4.4 57.8 1.0
CG A:ASN202 4.5 90.2 1.0
CZ A:PHE275 4.6 65.3 1.0
CZ A:ARG206 4.6 76.3 1.0
CE2 A:PHE205 4.9 54.2 1.0
CG A:PHE275 4.9 62.7 1.0
CG A:PHE205 5.0 55.1 1.0

Chlorine binding site 2 out of 2 in 8u2q

Go back to Chlorine Binding Sites List in 8u2q
Chlorine binding site 2 out of 2 in the Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:82.1
occ:1.00
O B:ARG362 3.0 48.1 1.0
OD1 B:ASN44 3.5 42.7 1.0
CG B:ASN44 3.9 42.5 1.0
C B:ARG362 4.0 46.5 1.0
NE2 B:GLN48 4.2 49.0 1.0
CB B:ASN44 4.3 40.8 1.0
NZ B:LYS367 4.3 55.2 1.0
CA B:ARG362 4.3 52.4 1.0
O B:HOH601 4.5 56.7 1.0
CB B:ARG362 4.5 50.4 1.0
CA B:ASN44 4.5 43.2 1.0
ND2 B:ASN44 4.6 49.9 1.0
CE B:LYS367 4.7 52.2 1.0
C B:CYS461 4.7 94.0 1.0
C B:GLY460 4.7 91.7 1.0
OXT B:CYS461 4.8 82.7 1.0
O B:GLY460 4.8 74.2 1.0
O B:CYS461 4.8 92.3 1.0
N B:CYS461 4.8 85.7 1.0
O B:ASN44 4.8 42.9 1.0
CG B:ARG47 4.9 54.5 1.0

Reference:

S.Seibold, S.Lovell, K.P.Battaile, A.Derocher. Crystal Structure of Glycine--Trna Ligase Active Site Chimera From Mycobacterium Thermoresistibile/Tuberculosis (G5A Bound) To Be Published.
Page generated: Thu Dec 28 03:33:50 2023

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