Chlorine in PDB 8u78: Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
Protein crystallography data
The structure of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue, PDB code: 8u78
was solved by
J.S.Nowick,
H.Yang,
A.G.Kreutzer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
24.88 /
1.50
|
Space group
|
P 43
|
Cell size a, b, c (Å), α, β, γ (°)
|
24.88,
24.88,
106.315,
90,
90,
90
|
R / Rfree (%)
|
15.4 /
18.3
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Chlorine atom in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
(pdb code 8u78). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the
Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue, PDB code: 8u78:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 1 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_01.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl101
b:10.0
occ:1.00
|
H
|
A:SER7
|
2.3
|
11.1
|
1.0
|
H
|
A:ILE11
|
2.4
|
14.0
|
1.0
|
H
|
A:LYS10
|
2.5
|
14.3
|
1.0
|
HB2
|
A:LYS10
|
2.8
|
14.8
|
1.0
|
HG
|
A:SER7
|
2.9
|
14.5
|
1.0
|
HD11
|
D:ILE11
|
2.9
|
25.2
|
1.0
|
O
|
A:HOH201
|
2.9
|
30.8
|
1.0
|
HA
|
A:ILE6
|
3.1
|
13.3
|
1.0
|
N
|
A:SER7
|
3.2
|
9.3
|
1.0
|
H
|
A:ALA9
|
3.2
|
12.2
|
1.0
|
N
|
A:ILE11
|
3.2
|
11.7
|
1.0
|
N
|
A:LYS10
|
3.3
|
11.9
|
1.0
|
HB
|
A:ILE11
|
3.3
|
18.2
|
1.0
|
N
|
A:DTH8
|
3.4
|
9.6
|
1.0
|
HG23
|
A:ILE6
|
3.4
|
17.4
|
1.0
|
O
|
A:HOH204
|
3.4
|
19.5
|
1.0
|
OG1
|
A:DTH8
|
3.6
|
11.7
|
1.0
|
N
|
A:ALA9
|
3.6
|
10.2
|
1.0
|
CB
|
A:LYS10
|
3.6
|
12.4
|
1.0
|
OG
|
A:SER7
|
3.7
|
12.1
|
1.0
|
CD1
|
D:ILE11
|
3.8
|
21.0
|
1.0
|
CA
|
A:LYS10
|
3.9
|
12.7
|
1.0
|
HB3
|
A:ALA9
|
3.9
|
15.7
|
1.0
|
CA
|
A:ILE6
|
3.9
|
11.1
|
1.0
|
C
|
A:ILE6
|
4.0
|
12.1
|
1.0
|
CA
|
A:SER7
|
4.0
|
9.1
|
1.0
|
C
|
A:LYS10
|
4.0
|
19.1
|
1.0
|
CB
|
A:ILE11
|
4.1
|
15.2
|
1.0
|
CA
|
A:ILE11
|
4.1
|
13.2
|
1.0
|
HG3
|
A:LYS10
|
4.1
|
18.4
|
1.0
|
C
|
A:SER7
|
4.1
|
9.8
|
1.0
|
C
|
A:DTH8
|
4.1
|
11.1
|
1.0
|
CA
|
A:DTH8
|
4.1
|
10.3
|
1.0
|
HG13
|
D:ILE11
|
4.2
|
21.9
|
1.0
|
HD12
|
D:ILE11
|
4.2
|
25.2
|
1.0
|
HG12
|
A:ILE11
|
4.2
|
28.7
|
1.0
|
HG12
|
A:ILE6
|
4.3
|
16.6
|
1.0
|
CG2
|
A:ILE6
|
4.3
|
14.5
|
1.0
|
CB
|
A:SER7
|
4.3
|
8.7
|
1.0
|
C
|
A:ALA9
|
4.3
|
15.6
|
1.0
|
HB3
|
A:LYS10
|
4.3
|
14.8
|
1.0
|
CG
|
A:LYS10
|
4.4
|
15.4
|
1.0
|
HD3
|
A:LYS10
|
4.4
|
26.3
|
1.0
|
C
|
A:ILE11
|
4.4
|
16.9
|
1.0
|
CA
|
A:ALA9
|
4.4
|
13.0
|
1.0
|
HG12
|
D:ILE11
|
4.4
|
21.9
|
1.0
|
CG1
|
D:ILE11
|
4.4
|
18.3
|
1.0
|
O
|
A:28J5
|
4.4
|
12.9
|
1.0
|
HD13
|
D:ILE11
|
4.4
|
25.2
|
1.0
|
CB
|
A:DTH8
|
4.5
|
13.9
|
1.0
|
HB3
|
A:SER7
|
4.5
|
10.4
|
1.0
|
CB
|
A:ALA9
|
4.6
|
13.1
|
1.0
|
CB
|
A:ILE6
|
4.6
|
13.0
|
1.0
|
CG1
|
A:ILE11
|
4.6
|
23.9
|
1.0
|
CD
|
A:LYS10
|
4.7
|
21.9
|
1.0
|
HG22
|
A:ILE6
|
4.8
|
17.4
|
1.0
|
HD2
|
A:LYS10
|
4.8
|
26.3
|
1.0
|
HA
|
A:LYS10
|
4.8
|
15.3
|
1.0
|
HG23
|
A:DTH8
|
4.8
|
17.0
|
1.0
|
HG21
|
A:ILE6
|
4.9
|
17.4
|
1.0
|
HA
|
A:SER7
|
4.9
|
10.9
|
1.0
|
CG1
|
A:ILE6
|
4.9
|
13.8
|
1.0
|
HA
|
A:ILE11
|
5.0
|
15.8
|
1.0
|
HG13
|
A:ILE11
|
5.0
|
28.7
|
1.0
|
HB2
|
A:ALA9
|
5.0
|
15.7
|
1.0
|
|
Chlorine binding site 2 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 2 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_02.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl102
b:42.1
occ:1.00
|
O
|
D:HOH205
|
2.8
|
23.8
|
1.0
|
O
|
A:HOH203
|
3.0
|
22.4
|
1.0
|
HE3
|
A:LYS10
|
3.0
|
30.6
|
1.0
|
HB1
|
D:HJV4
|
3.1
|
19.0
|
1.0
|
HB2
|
D:HJV4
|
3.4
|
19.0
|
1.0
|
CL
|
D:CL102
|
3.6
|
50.3
|
1.0
|
HG2
|
D:HJV4
|
3.6
|
31.1
|
1.0
|
CB
|
D:HJV4
|
3.7
|
15.9
|
1.0
|
CE
|
A:LYS10
|
3.9
|
25.5
|
1.0
|
HZ2
|
A:LYS10
|
4.0
|
27.9
|
1.0
|
HZ3
|
A:LYS10
|
4.1
|
27.9
|
1.0
|
CG
|
D:HJV4
|
4.1
|
25.9
|
1.0
|
NZ
|
A:LYS10
|
4.2
|
23.3
|
1.0
|
HG2
|
A:LYS10
|
4.3
|
18.4
|
1.0
|
HE2
|
A:LYS10
|
4.4
|
30.6
|
1.0
|
O
|
D:HJV4
|
4.6
|
17.1
|
1.0
|
HD2
|
A:LYS10
|
4.8
|
26.3
|
1.0
|
HG1
|
D:HJV4
|
4.8
|
31.1
|
1.0
|
CD
|
A:LYS10
|
4.8
|
21.9
|
1.0
|
O
|
D:HOH204
|
4.9
|
33.6
|
1.0
|
CG
|
A:LYS10
|
4.9
|
15.4
|
1.0
|
|
Chlorine binding site 3 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 3 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_03.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl103
b:48.2
occ:1.00
|
H10
|
A:HJV4
|
3.0
|
44.5
|
1.0
|
O
|
A:HOH207
|
3.1
|
27.0
|
1.0
|
HZ2
|
D:LYS10
|
3.4
|
19.5
|
1.0
|
NE2
|
A:HJV4
|
3.6
|
37.1
|
1.0
|
HZ3
|
D:LYS10
|
3.6
|
19.5
|
1.0
|
HZ1
|
D:LYS10
|
3.8
|
19.5
|
1.0
|
NZ
|
D:LYS10
|
3.8
|
16.2
|
1.0
|
OE1
|
A:HJV4
|
3.9
|
32.9
|
1.0
|
CD
|
A:HJV4
|
4.1
|
33.6
|
1.0
|
H11
|
A:HJV4
|
4.2
|
44.5
|
1.0
|
O
|
D:HOH202
|
4.9
|
27.9
|
1.0
|
|
Chlorine binding site 4 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 4 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_04.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl101
b:12.2
occ:1.00
|
H
|
B:SER7
|
2.4
|
11.9
|
1.0
|
H
|
B:ILE11
|
2.5
|
17.6
|
1.0
|
H
|
B:LYS10
|
2.6
|
23.1
|
1.0
|
HZ3
|
H:LYS10
|
2.6
|
46.0
|
1.0
|
HD3
|
H:LYS10
|
2.8
|
25.9
|
1.0
|
HG
|
B:SER7
|
3.0
|
19.5
|
1.0
|
HA
|
B:ILE6
|
3.1
|
12.5
|
1.0
|
HB2
|
B:LYS10
|
3.1
|
26.9
|
1.0
|
HB
|
B:ILE11
|
3.2
|
19.1
|
1.0
|
N
|
B:SER7
|
3.2
|
10.0
|
1.0
|
HG23
|
B:ILE6
|
3.3
|
15.1
|
1.0
|
N
|
B:ILE11
|
3.3
|
14.7
|
1.0
|
N
|
B:DTH8
|
3.3
|
10.8
|
1.0
|
N
|
B:LYS10
|
3.4
|
19.2
|
1.0
|
NZ
|
H:LYS10
|
3.4
|
38.3
|
1.0
|
H
|
B:ALA9
|
3.4
|
17.4
|
1.0
|
CD
|
H:LYS10
|
3.6
|
21.6
|
1.0
|
HD12
|
B:ILE11
|
3.6
|
24.3
|
1.0
|
OG1
|
B:DTH8
|
3.7
|
13.8
|
1.0
|
OG
|
B:SER7
|
3.7
|
16.2
|
1.0
|
HD2
|
H:LYS10
|
3.7
|
25.9
|
1.0
|
HB3
|
B:ALA9
|
3.7
|
22.0
|
1.0
|
N
|
B:ALA9
|
3.8
|
14.5
|
1.0
|
HZ2
|
H:LYS10
|
3.8
|
46.0
|
1.0
|
HD13
|
B:ILE11
|
3.8
|
24.3
|
1.0
|
CE
|
H:LYS10
|
3.9
|
23.1
|
1.0
|
CA
|
B:ILE6
|
3.9
|
10.4
|
1.0
|
HE2
|
H:LYS10
|
3.9
|
27.7
|
1.0
|
CB
|
B:LYS10
|
3.9
|
22.4
|
1.0
|
CA
|
B:LYS10
|
4.0
|
15.8
|
1.0
|
CB
|
B:ILE11
|
4.0
|
15.9
|
1.0
|
HZ1
|
H:LYS10
|
4.0
|
46.0
|
1.0
|
C
|
B:ILE6
|
4.1
|
11.7
|
1.0
|
CA
|
B:ILE11
|
4.1
|
14.2
|
1.0
|
CA
|
B:SER7
|
4.1
|
12.5
|
1.0
|
CD1
|
B:ILE11
|
4.1
|
20.2
|
1.0
|
C
|
B:LYS10
|
4.1
|
16.3
|
1.0
|
C
|
B:DTH8
|
4.1
|
15.3
|
1.0
|
CA
|
B:DTH8
|
4.2
|
11.8
|
1.0
|
CG2
|
B:ILE6
|
4.2
|
12.6
|
1.0
|
C
|
B:SER7
|
4.2
|
11.6
|
1.0
|
HG12
|
B:ILE6
|
4.2
|
13.2
|
1.0
|
C
|
B:ALA9
|
4.4
|
28.9
|
1.0
|
HB3
|
B:LYS10
|
4.4
|
26.9
|
1.0
|
CA
|
B:ALA9
|
4.4
|
19.9
|
1.0
|
CB
|
B:SER7
|
4.5
|
13.7
|
1.0
|
C
|
B:ILE11
|
4.5
|
10.8
|
1.0
|
CB
|
B:ALA9
|
4.5
|
18.3
|
1.0
|
CB
|
B:ILE6
|
4.5
|
11.7
|
1.0
|
O
|
B:28J5
|
4.5
|
14.4
|
1.0
|
CB
|
B:DTH8
|
4.6
|
12.8
|
1.0
|
CG1
|
B:ILE11
|
4.7
|
19.8
|
1.0
|
HG22
|
B:ILE6
|
4.7
|
15.1
|
1.0
|
HG21
|
B:ILE6
|
4.7
|
15.1
|
1.0
|
HB3
|
B:SER7
|
4.8
|
16.5
|
1.0
|
HG3
|
B:LYS10
|
4.8
|
39.7
|
1.0
|
HB3
|
H:LYS10
|
4.8
|
26.2
|
1.0
|
HE3
|
H:LYS10
|
4.8
|
27.7
|
1.0
|
CG1
|
B:ILE6
|
4.9
|
11.0
|
1.0
|
HG23
|
B:DTH8
|
4.9
|
19.1
|
1.0
|
CG
|
H:LYS10
|
4.9
|
21.2
|
1.0
|
HB2
|
B:ALA9
|
4.9
|
22.0
|
1.0
|
HD3
|
B:LYS10
|
4.9
|
42.2
|
1.0
|
HB2
|
H:LYS10
|
4.9
|
26.2
|
1.0
|
CG
|
B:LYS10
|
4.9
|
33.1
|
1.0
|
HA
|
B:LYS10
|
4.9
|
19.0
|
1.0
|
O
|
B:DTH8
|
5.0
|
19.4
|
1.0
|
HD11
|
B:ILE11
|
5.0
|
24.3
|
1.0
|
HA
|
B:SER7
|
5.0
|
15.0
|
1.0
|
N
|
B:ILE6
|
5.0
|
10.0
|
1.0
|
|
Chlorine binding site 5 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 5 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_05.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl102
b:65.8
occ:1.00
|
H28
|
B:28J5
|
2.4
|
34.9
|
1.0
|
H29
|
B:28J5
|
2.9
|
34.9
|
1.0
|
CD1
|
B:28J5
|
3.0
|
29.1
|
1.0
|
H30
|
B:28J5
|
3.3
|
34.9
|
1.0
|
O
|
B:HJV4
|
3.6
|
23.8
|
1.0
|
HA
|
B:28J5
|
3.6
|
19.1
|
1.0
|
HG21
|
B:ILE2
|
3.6
|
20.9
|
1.0
|
HG22
|
B:ILE2
|
3.7
|
20.9
|
1.0
|
CG2
|
B:ILE2
|
4.1
|
17.4
|
1.0
|
CG1
|
B:28J5
|
4.3
|
23.5
|
1.0
|
HG23
|
B:ILE2
|
4.5
|
20.9
|
1.0
|
CA
|
B:28J5
|
4.5
|
15.9
|
1.0
|
H27
|
B:28J5
|
4.5
|
28.2
|
1.0
|
C
|
B:HJV4
|
4.6
|
17.1
|
1.0
|
H22
|
B:28J5
|
4.8
|
23.9
|
1.0
|
CB
|
B:28J5
|
4.8
|
19.9
|
1.0
|
|
Chlorine binding site 6 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 6 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_06.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl101
b:10.9
occ:1.00
|
H
|
C:SER7
|
2.4
|
12.9
|
1.0
|
H
|
C:ILE11
|
2.4
|
14.8
|
1.0
|
H
|
C:LYS10
|
2.5
|
13.8
|
1.0
|
HZ2
|
G:LYS10
|
2.8
|
33.0
|
1.0
|
HD2
|
G:LYS10
|
2.8
|
25.4
|
1.0
|
HG
|
C:SER7
|
3.0
|
17.6
|
1.0
|
HA
|
C:ILE6
|
3.0
|
12.8
|
1.0
|
HB3
|
C:LYS10
|
3.0
|
15.1
|
1.0
|
HG23
|
C:ILE6
|
3.1
|
17.5
|
1.0
|
N
|
C:SER7
|
3.2
|
10.7
|
1.0
|
N
|
C:ILE11
|
3.2
|
12.4
|
1.0
|
N
|
C:DTH8
|
3.3
|
14.1
|
1.0
|
H
|
C:ALA9
|
3.3
|
14.0
|
1.0
|
N
|
C:LYS10
|
3.3
|
11.5
|
1.0
|
HB
|
C:ILE11
|
3.4
|
15.8
|
1.0
|
OG1
|
C:DTH8
|
3.6
|
13.4
|
1.0
|
NZ
|
G:LYS10
|
3.6
|
27.5
|
1.0
|
CD
|
G:LYS10
|
3.6
|
21.2
|
1.0
|
HE3
|
G:LYS10
|
3.7
|
34.2
|
1.0
|
N
|
C:ALA9
|
3.7
|
11.7
|
1.0
|
OG
|
C:SER7
|
3.7
|
14.7
|
1.0
|
HG12
|
C:ILE11
|
3.8
|
22.2
|
1.0
|
CE
|
G:LYS10
|
3.8
|
28.5
|
1.0
|
CA
|
C:ILE6
|
3.8
|
10.7
|
1.0
|
HG12
|
C:ILE6
|
3.8
|
17.0
|
1.0
|
CB
|
C:LYS10
|
3.8
|
12.6
|
1.0
|
HD3
|
G:LYS10
|
3.9
|
25.4
|
1.0
|
CA
|
C:LYS10
|
3.9
|
11.3
|
1.0
|
C
|
C:ILE6
|
4.0
|
11.3
|
1.0
|
CG2
|
C:ILE6
|
4.0
|
14.6
|
1.0
|
CA
|
C:SER7
|
4.0
|
11.4
|
1.0
|
CB
|
C:ILE11
|
4.1
|
13.2
|
1.0
|
HZ3
|
G:LYS10
|
4.1
|
33.0
|
1.0
|
CA
|
C:ILE11
|
4.1
|
13.5
|
1.0
|
C
|
C:LYS10
|
4.1
|
12.2
|
1.0
|
C
|
C:DTH8
|
4.1
|
11.2
|
1.0
|
HB3
|
C:ALA9
|
4.1
|
17.3
|
1.0
|
CA
|
C:DTH8
|
4.1
|
10.7
|
1.0
|
HZ1
|
G:LYS10
|
4.1
|
33.0
|
1.0
|
C
|
C:SER7
|
4.1
|
14.0
|
1.0
|
HB2
|
C:LYS10
|
4.3
|
15.1
|
1.0
|
CB
|
C:ILE6
|
4.4
|
11.7
|
1.0
|
C
|
C:ALA9
|
4.4
|
12.5
|
1.0
|
CG1
|
C:ILE11
|
4.4
|
18.5
|
1.0
|
C
|
C:ILE11
|
4.4
|
12.5
|
1.0
|
CB
|
C:DTH8
|
4.4
|
13.6
|
1.0
|
CA
|
C:ALA9
|
4.4
|
14.1
|
1.0
|
O
|
C:28J5
|
4.4
|
14.7
|
1.0
|
CB
|
C:SER7
|
4.5
|
10.9
|
1.0
|
O
|
C:HOH205
|
4.5
|
29.5
|
1.0
|
CG1
|
C:ILE6
|
4.6
|
14.2
|
1.0
|
HG22
|
C:ILE6
|
4.6
|
17.5
|
1.0
|
HG21
|
C:ILE6
|
4.6
|
17.5
|
1.0
|
HB3
|
C:SER7
|
4.7
|
13.1
|
1.0
|
HG23
|
C:DTH8
|
4.8
|
16.6
|
1.0
|
CB
|
C:ALA9
|
4.8
|
14.4
|
1.0
|
HG13
|
C:ILE11
|
4.8
|
22.2
|
1.0
|
HE2
|
G:LYS10
|
4.8
|
34.2
|
1.0
|
CG
|
G:LYS10
|
4.8
|
30.1
|
1.0
|
HB3
|
G:LYS10
|
4.8
|
20.2
|
1.0
|
HA
|
C:LYS10
|
4.9
|
13.6
|
1.0
|
HA
|
C:SER7
|
4.9
|
13.7
|
1.0
|
HG3
|
G:LYS10
|
4.9
|
36.1
|
1.0
|
O
|
C:DTH8
|
4.9
|
11.4
|
1.0
|
HA
|
C:ILE11
|
4.9
|
16.2
|
1.0
|
N
|
C:ILE6
|
5.0
|
11.4
|
1.0
|
HA
|
C:DTH8
|
5.0
|
12.8
|
1.0
|
HG13
|
C:ILE6
|
5.0
|
17.0
|
1.0
|
CG
|
C:LYS10
|
5.0
|
13.8
|
1.0
|
|
Chlorine binding site 7 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 7 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_07.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl102
b:30.2
occ:1.00
|
O
|
C:HOH208
|
2.5
|
37.7
|
1.0
|
O
|
C:HOH206
|
2.6
|
20.9
|
1.0
|
HG1
|
C:HJV4
|
2.8
|
31.7
|
1.0
|
HG2
|
C:HJV4
|
3.2
|
31.7
|
1.0
|
CG
|
C:HJV4
|
3.4
|
26.4
|
1.0
|
HA
|
C:HJV4
|
3.4
|
21.8
|
1.0
|
HE2
|
G:LYS10
|
3.9
|
34.2
|
1.0
|
HB1
|
C:HJV4
|
4.1
|
22.5
|
1.0
|
CB
|
C:HJV4
|
4.1
|
18.8
|
1.0
|
CA
|
C:HJV4
|
4.2
|
18.1
|
1.0
|
HG2
|
G:LYS10
|
4.5
|
36.1
|
1.0
|
HB1
|
G:ALA9
|
4.5
|
33.2
|
1.0
|
HZ3
|
G:LYS10
|
4.5
|
33.0
|
1.0
|
CD
|
C:HJV4
|
4.7
|
52.8
|
1.0
|
CE
|
G:LYS10
|
4.8
|
28.5
|
1.0
|
O
|
G:ALA9
|
4.9
|
29.4
|
1.0
|
HZ1
|
G:LYS10
|
5.0
|
33.0
|
1.0
|
NZ
|
G:LYS10
|
5.0
|
27.5
|
1.0
|
|
Chlorine binding site 8 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 8 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_08.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl101
b:11.3
occ:1.00
|
HZ1
|
A:LYS10
|
2.2
|
27.9
|
1.0
|
H
|
D:SER7
|
2.3
|
13.5
|
1.0
|
H
|
D:ILE11
|
2.4
|
15.1
|
1.0
|
H
|
D:LYS10
|
2.4
|
14.4
|
1.0
|
HG
|
D:SER7
|
2.9
|
16.6
|
1.0
|
HA
|
D:ILE6
|
3.0
|
15.7
|
1.0
|
NZ
|
A:LYS10
|
3.1
|
23.3
|
1.0
|
N
|
D:SER7
|
3.1
|
11.3
|
1.0
|
HG2
|
D:LYS10
|
3.1
|
25.1
|
1.0
|
HB2
|
D:LYS10
|
3.2
|
16.6
|
1.0
|
N
|
D:ILE11
|
3.2
|
12.6
|
1.0
|
N
|
D:LYS10
|
3.2
|
12.0
|
1.0
|
HZ3
|
A:LYS10
|
3.3
|
27.9
|
1.0
|
HB
|
D:ILE11
|
3.4
|
15.7
|
1.0
|
N
|
D:DTH8
|
3.4
|
10.1
|
1.0
|
HG23
|
D:ILE6
|
3.4
|
20.8
|
1.0
|
H
|
D:ALA9
|
3.4
|
16.4
|
1.0
|
HD3
|
A:LYS10
|
3.5
|
26.3
|
1.0
|
HZ2
|
A:LYS10
|
3.5
|
27.9
|
1.0
|
OG
|
D:SER7
|
3.6
|
13.8
|
1.0
|
OG1
|
D:DTH8
|
3.7
|
11.5
|
1.0
|
N
|
D:ALA9
|
3.7
|
13.7
|
1.0
|
CB
|
D:LYS10
|
3.7
|
13.8
|
1.0
|
CA
|
D:ILE6
|
3.8
|
13.1
|
1.0
|
CA
|
D:LYS10
|
3.8
|
12.0
|
1.0
|
CG
|
D:LYS10
|
3.8
|
20.9
|
1.0
|
CE
|
A:LYS10
|
3.9
|
25.5
|
1.0
|
C
|
D:ILE6
|
4.0
|
13.9
|
1.0
|
HB3
|
D:ALA9
|
4.0
|
14.3
|
1.0
|
CA
|
D:SER7
|
4.0
|
11.7
|
1.0
|
HG13
|
D:ILE11
|
4.0
|
21.9
|
1.0
|
C
|
D:LYS10
|
4.0
|
15.5
|
1.0
|
CD
|
A:LYS10
|
4.1
|
21.9
|
1.0
|
HD12
|
D:ILE11
|
4.1
|
25.2
|
1.0
|
CB
|
D:ILE11
|
4.1
|
13.1
|
1.0
|
HE2
|
A:LYS10
|
4.1
|
30.6
|
1.0
|
CA
|
D:ILE11
|
4.1
|
13.0
|
1.0
|
C
|
D:DTH8
|
4.1
|
13.9
|
1.0
|
HD2
|
A:LYS10
|
4.1
|
26.3
|
1.0
|
C
|
D:SER7
|
4.2
|
10.5
|
1.0
|
HG3
|
D:LYS10
|
4.2
|
25.1
|
1.0
|
CA
|
D:DTH8
|
4.2
|
12.8
|
1.0
|
C
|
D:ALA9
|
4.3
|
15.2
|
1.0
|
CG2
|
D:ILE6
|
4.3
|
17.4
|
1.0
|
CB
|
D:SER7
|
4.3
|
14.2
|
1.0
|
CA
|
D:ALA9
|
4.4
|
10.9
|
1.0
|
C
|
D:ILE11
|
4.4
|
13.1
|
1.0
|
HG12
|
D:ILE6
|
4.4
|
23.8
|
1.0
|
CG1
|
D:ILE11
|
4.4
|
18.3
|
1.0
|
O
|
D:28J5
|
4.6
|
16.1
|
1.0
|
CB
|
D:ILE6
|
4.6
|
12.7
|
1.0
|
CB
|
D:DTH8
|
4.6
|
12.3
|
1.0
|
HB3
|
D:SER7
|
4.6
|
17.1
|
1.0
|
HB3
|
D:LYS10
|
4.6
|
16.6
|
1.0
|
HG22
|
D:ILE6
|
4.7
|
20.8
|
1.0
|
CB
|
D:ALA9
|
4.7
|
11.9
|
1.0
|
CD1
|
D:ILE11
|
4.7
|
21.0
|
1.0
|
HA
|
D:LYS10
|
4.8
|
14.4
|
1.0
|
HE3
|
A:LYS10
|
4.8
|
30.6
|
1.0
|
HG23
|
D:DTH8
|
4.9
|
19.5
|
1.0
|
O
|
D:DTH8
|
4.9
|
15.4
|
1.0
|
HA
|
D:SER7
|
4.9
|
14.1
|
1.0
|
N
|
D:ILE6
|
4.9
|
13.6
|
1.0
|
O
|
D:HOH204
|
4.9
|
33.6
|
1.0
|
HG21
|
D:ILE6
|
4.9
|
20.8
|
1.0
|
HA
|
D:ILE11
|
5.0
|
15.6
|
1.0
|
|
Chlorine binding site 9 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 9 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_09.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl102
b:50.3
occ:1.00
|
OE1
|
D:HJV4
|
3.3
|
39.4
|
1.0
|
HG3
|
A:LYS10
|
3.3
|
18.4
|
1.0
|
HB1
|
A:ALA9
|
3.4
|
15.7
|
1.0
|
CL
|
A:CL102
|
3.6
|
42.1
|
1.0
|
HG2
|
A:LYS10
|
3.7
|
18.4
|
1.0
|
HG2
|
D:HJV4
|
3.8
|
31.1
|
1.0
|
CG
|
A:LYS10
|
3.9
|
15.4
|
1.0
|
HB1
|
D:HJV4
|
3.9
|
19.0
|
1.0
|
HB3
|
A:ALA9
|
4.0
|
15.7
|
1.0
|
HE3
|
A:LYS10
|
4.0
|
30.6
|
1.0
|
CD
|
D:HJV4
|
4.1
|
25.9
|
1.0
|
CB
|
A:ALA9
|
4.2
|
13.1
|
1.0
|
HD2
|
A:LYS10
|
4.2
|
26.3
|
1.0
|
CG
|
D:HJV4
|
4.3
|
25.9
|
1.0
|
CD
|
A:LYS10
|
4.5
|
21.9
|
1.0
|
CB
|
D:HJV4
|
4.6
|
15.9
|
1.0
|
O
|
A:HOH203
|
4.7
|
22.4
|
1.0
|
CE
|
A:LYS10
|
4.8
|
25.5
|
1.0
|
HB2
|
A:ALA9
|
4.8
|
15.7
|
1.0
|
C
|
A:ALA9
|
4.8
|
15.6
|
1.0
|
O
|
A:ALA9
|
5.0
|
17.6
|
1.0
|
N
|
A:LYS10
|
5.0
|
11.9
|
1.0
|
|
Chlorine binding site 10 out
of 14 in 8u78
Go back to
Chlorine Binding Sites List in 8u78
Chlorine binding site 10 out
of 14 in the Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue
![](/pictures/CL/pdb/u7/8u78-CL-sphere_10.jpg) Mono view
![](/pictures/CL/pdb/u7/8u78-CL-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl101
b:11.7
occ:1.00
|
HZ3
|
F:LYS10
|
2.3
|
44.8
|
1.0
|
H
|
E:SER7
|
2.4
|
14.2
|
1.0
|
H
|
E:ILE11
|
2.4
|
17.4
|
1.0
|
H
|
E:LYS10
|
2.4
|
18.7
|
1.0
|
HB2
|
E:LYS10
|
2.8
|
14.9
|
1.0
|
HB
|
E:ILE6
|
3.1
|
18.4
|
1.0
|
NZ
|
F:LYS10
|
3.1
|
37.3
|
1.0
|
N
|
E:SER7
|
3.2
|
11.9
|
1.0
|
N
|
E:LYS10
|
3.2
|
15.6
|
1.0
|
N
|
E:ILE11
|
3.2
|
14.5
|
1.0
|
N
|
E:DTH8
|
3.3
|
14.0
|
1.0
|
HA
|
E:ILE6
|
3.3
|
17.2
|
1.0
|
H
|
E:ALA9
|
3.3
|
18.2
|
1.0
|
HB
|
E:ILE11
|
3.3
|
21.2
|
1.0
|
HZ2
|
F:LYS10
|
3.6
|
44.8
|
1.0
|
HZ1
|
F:LYS10
|
3.6
|
44.8
|
1.0
|
OG
|
E:SER7
|
3.6
|
19.8
|
1.0
|
CB
|
E:LYS10
|
3.6
|
12.4
|
1.0
|
N
|
E:ALA9
|
3.7
|
15.2
|
1.0
|
OG1
|
E:DTH8
|
3.7
|
12.1
|
1.0
|
HE2
|
F:LYS10
|
3.8
|
42.4
|
1.0
|
HE3
|
F:LYS10
|
3.8
|
42.4
|
1.0
|
CA
|
E:LYS10
|
3.8
|
14.3
|
1.0
|
CE
|
F:LYS10
|
3.8
|
35.3
|
1.0
|
CA
|
E:ILE6
|
3.8
|
14.3
|
1.0
|
CB
|
E:ILE6
|
3.9
|
15.3
|
1.0
|
HG22
|
E:ILE6
|
3.9
|
21.3
|
1.0
|
HG3
|
E:LYS10
|
4.0
|
25.8
|
1.0
|
C
|
E:ILE6
|
4.0
|
14.8
|
1.0
|
HB3
|
E:ALA9
|
4.0
|
29.6
|
1.0
|
C
|
E:LYS10
|
4.0
|
12.7
|
1.0
|
CA
|
E:SER7
|
4.0
|
13.8
|
1.0
|
C
|
E:SER7
|
4.1
|
16.3
|
1.0
|
CA
|
E:DTH8
|
4.1
|
14.5
|
1.0
|
C
|
E:DTH8
|
4.1
|
16.0
|
1.0
|
CA
|
E:ILE11
|
4.1
|
14.3
|
1.0
|
CB
|
E:ILE11
|
4.1
|
17.6
|
1.0
|
HG
|
E:SER7
|
4.2
|
23.7
|
1.0
|
C
|
E:ALA9
|
4.3
|
16.8
|
1.0
|
CB
|
E:SER7
|
4.3
|
19.0
|
1.0
|
HB3
|
E:LYS10
|
4.4
|
14.9
|
1.0
|
CG
|
E:LYS10
|
4.4
|
21.5
|
1.0
|
CG2
|
E:ILE6
|
4.4
|
17.7
|
1.0
|
CA
|
E:ALA9
|
4.4
|
16.3
|
1.0
|
C
|
E:ILE11
|
4.5
|
13.6
|
1.0
|
CB
|
E:DTH8
|
4.5
|
11.3
|
1.0
|
HB3
|
E:SER7
|
4.6
|
22.8
|
1.0
|
HG21
|
E:ILE6
|
4.6
|
21.3
|
1.0
|
HG23
|
E:DTH8
|
4.6
|
16.7
|
1.0
|
HG12
|
F:ILE11
|
4.7
|
38.4
|
1.0
|
CB
|
E:ALA9
|
4.7
|
24.6
|
1.0
|
HA
|
E:LYS10
|
4.7
|
17.2
|
1.0
|
HD11
|
F:ILE11
|
4.8
|
53.3
|
1.0
|
HD3
|
E:LYS10
|
4.8
|
21.2
|
1.0
|
HG13
|
E:ILE11
|
4.8
|
32.6
|
1.0
|
HD13
|
E:ILE11
|
4.9
|
33.9
|
1.0
|
HA
|
E:SER7
|
4.9
|
16.6
|
1.0
|
HD11
|
E:ILE11
|
4.9
|
33.9
|
1.0
|
CG1
|
E:ILE11
|
4.9
|
27.2
|
1.0
|
O
|
E:DTH8
|
5.0
|
19.1
|
1.0
|
|
Reference:
H.Yang,
A.G.Kreutzer,
J.S.Nowick.
Structure of A N-Me-D-GLN4,LYS10-Teixobactin Analogue To Be Published.
Page generated: Tue Jul 30 13:05:03 2024
|