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Chlorine in PDB 8u9a: Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound)

Protein crystallography data

The structure of Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound), PDB code: 8u9a was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.04 / 1.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.542, 111.087, 57.896, 90, 90, 90
R / Rfree (%) 16.1 / 18.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound) (pdb code 8u9a). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound), PDB code: 8u9a:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 8u9a

Go back to Chlorine Binding Sites List in 8u9a
Chlorine binding site 1 out of 3 in the Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:55.2
occ:1.00
N A:TYR47 3.4 30.7 1.0
O A:HOH408 3.9 47.9 1.0
CA A:GLY46 3.9 35.7 1.0
O A:TYR47 4.0 34.3 1.0
C A:GLY46 4.1 32.9 1.0
CA A:TYR47 4.2 30.3 1.0
CB A:TYR47 4.4 29.8 1.0
CD2 A:TYR47 4.4 27.0 1.0
O A:GLU45 4.5 60.2 1.0
C A:TYR47 4.5 31.3 1.0
N A:GLY46 4.6 40.5 1.0
C A:GLU45 4.8 44.5 1.0
O A:HOH409 4.9 39.9 1.0
CG A:TYR47 4.9 22.9 1.0

Chlorine binding site 2 out of 3 in 8u9a

Go back to Chlorine Binding Sites List in 8u9a
Chlorine binding site 2 out of 3 in the Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:59.8
occ:1.00
N B:ILE20 3.4 21.8 1.0
O B:HOH478 3.6 23.9 1.0
O B:HOH499 3.6 37.7 1.0
CA B:GLY19 4.0 28.8 1.0
CG1 B:ILE20 4.0 21.1 1.0
CD1 B:ILE20 4.0 24.6 1.0
O B:HOH528 4.0 46.6 1.0
CB B:ILE20 4.1 20.8 1.0
C B:GLY19 4.2 23.5 1.0
CA B:ILE20 4.4 19.5 1.0
O B:LYS18 4.9 23.8 1.0

Chlorine binding site 3 out of 3 in 8u9a

Go back to Chlorine Binding Sites List in 8u9a
Chlorine binding site 3 out of 3 in the Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:58.2
occ:1.00
O B:HOH511 3.3 33.5 1.0
N B:ALA96 3.4 27.4 1.0
CA B:SER95 3.9 23.4 1.0
CB B:SER95 4.0 27.8 1.0
CB B:ALA96 4.0 31.9 1.0
C B:SER95 4.2 25.9 1.0
CA B:ALA96 4.4 28.5 1.0
O A:HOH539 4.4 38.2 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile. Crystal Structure of 2,3-Dihydro-2,3-Dihydroxybenzoate Dehydrogenase From Klebsiella Aerogenes (Dbh Bound) To Be Published.
Page generated: Thu Dec 28 03:36:21 2023

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