Chlorine in PDB 8ucz: Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant

The structure of Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant, PDB code: 8ucz was solved by B.Olasz, A.Vrielink, L.Smithers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.05 / 2.07
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	28.676, 92.587, 94.109, 90, 90, 90
R / Rfree (%)	24.8 / 27.7

The binding sites of Chlorine atom in the Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant (pdb code 8ucz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant, PDB code: 8ucz:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:39.7 occ:1.00 HZ1 A:LYS234 2.3 65.7 1.0 HH11 A:ARG243 2.6 32.9 1.0 O A:HOH463 2.7 29.9 1.0 HH22 A:ARG243 2.8 35.2 1.0 HZ3 A:LYS234 3.0 65.7 1.0 NZ A:LYS234 3.0 44.6 1.0 HG3 A:PRO240 3.1 30.1 1.0 HE3 A:LYS234 3.2 57.6 1.0 NH1 A:ARG243 3.4 23.4 1.0 HD3 A:PRO240 3.5 27.6 1.0 NH2 A:ARG243 3.6 24.9 1.0 CE A:LYS234 3.6 41.1 1.0 HZ2 A:LYS234 3.7 65.7 1.0 HG3 A:LYS234 3.7 40.2 1.0 CG A:PRO240 3.9 23.9 1.0 CZ A:ARG243 4.0 23.6 1.0 HH12 A:ARG243 4.0 32.9 1.0 CD A:PRO240 4.1 22.9 1.0 HG2 A:PRO240 4.2 30.1 1.0 HH21 A:ARG243 4.3 35.2 1.0 CG A:LYS234 4.3 31.3 1.0 CD A:LYS234 4.4 35.9 1.0 HD2 A:LYS234 4.4 48.7 1.0 HG2 A:LYS234 4.4 40.2 1.0 HE2 A:LYS234 4.4 57.6 1.0 HA A:PRO239 4.6 24.6 1.0 N A:PRO240 4.8 20.9 1.0 HD2 A:PRO240 4.9 27.6 1.0

Chlorine binding site 2 out of 3 in the Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:36.0 occ:1.00 HH12 B:ARG243 2.6 31.7 1.0 HD3 B:LYS234 2.9 56.4 1.0 HH22 B:ARG243 3.0 31.9 1.0 HG3 B:PRO240 3.0 31.6 1.0 HD2 B:LYS234 3.3 56.4 1.0 NH1 B:ARG243 3.4 21.6 1.0 CD B:LYS234 3.6 38.6 1.0 HD3 B:PRO240 3.6 29.5 1.0 NH2 B:ARG243 3.7 22.5 1.0 CG B:PRO240 3.9 25.6 1.0 HE2 B:LYS234 4.0 63.7 1.0 CZ B:ARG243 4.0 22.6 1.0 HH11 B:ARG243 4.1 31.7 1.0 HG2 B:PRO240 4.2 31.6 1.0 CD B:PRO240 4.2 24.3 1.0 CE B:LYS234 4.4 42.3 1.0 HH21 B:ARG243 4.4 31.9 1.0 HG3 B:LYS234 4.6 37.9 1.0 HA B:PRO239 4.6 25.5 1.0 O B:HOH440 4.7 42.8 1.0 CG B:LYS234 4.7 29.2 1.0 N B:PRO240 4.9 21.5 1.0 HZ3 B:LYS234 5.0 69.7 1.0

Chlorine binding site 3 out of 3 in the Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Sterile Alpha Motif (Sam) Domain From TRIC1 From Arabidopsis Thaliana - D235A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl301 b:34.2 occ:1.00 HH21 C:ARG243 2.6 27.1 1.0 HE2 C:LYS234 2.7 59.0 1.0 HH12 C:ARG243 2.8 33.2 1.0 HG3 C:PRO240 2.9 30.1 1.0 O C:HOH468 3.0 45.8 1.0 HB1 A:ALA235 3.0 36.6 1.0 HB1 A:ALA235 3.1 36.5 0.0 O C:HOH451 3.2 28.5 1.0 HE3 C:LYS234 3.3 59.0 1.0 NH2 C:ARG243 3.4 21.7 1.0 CE C:LYS234 3.4 40.4 1.0 NH1 C:ARG243 3.5 21.9 1.0 HD3 C:PRO240 3.7 29.9 1.0 HG2 C:LYS234 3.8 48.1 1.0 CG C:PRO240 3.8 22.9 1.0 CZ C:ARG243 3.9 21.9 1.0 CB A:ALA235 3.9 29.4 1.0 CB A:ALA235 3.9 29.3 0.0 HB2 A:ALA235 4.0 36.5 0.0 HB2 A:ALA235 4.0 36.6 1.0 HH22 C:ARG243 4.0 27.1 1.0 HG2 C:PRO240 4.1 30.1 1.0 HG3 C:LYS234 4.2 48.1 1.0 HH11 C:ARG243 4.2 33.2 1.0 CD C:PRO240 4.2 22.5 1.0 O A:HOH470 4.3 26.7 1.0 HZ1 C:LYS234 4.3 63.9 1.0 CG C:LYS234 4.3 33.7 1.0 HB3 A:ALA235 4.4 36.6 1.0 HB3 A:ALA235 4.4 36.5 0.0 CD C:LYS234 4.4 39.2 1.0 NZ C:LYS234 4.5 43.8 1.0 HD3 C:LYS234 4.6 58.2 1.0 HA C:PRO239 4.7 26.2 1.0 HZ3 C:LYS234 4.8 63.9 1.0 HA A:ALA235 4.9 35.0 0.0 HA A:ALA235 4.9 34.4 1.0 N C:PRO240 4.9 20.6 1.0 HB3 C:PRO240 4.9 29.5 1.0 CB C:PRO240 4.9 22.4 1.0 CA A:ALA235 5.0 28.3 1.0 CA A:ALA235 5.0 28.6 0.0

B.Olasz, L.Smithers, G.L.Evans, A.Anandan, M.W.Murcha, A.Vrielink. Structural Analysis of the Sam Domain of the Arabidopsis Mitochondrial Trna Import Receptor. J.Biol.Chem. 07258 2024.
ISSN: ESSN 1083-351X
PubMed: 38582448
DOI: 10.1016/J.JBC.2024.107258