Chlorine in PDB 8ue2: Structure of Trek-1CG*:ML335
Protein crystallography data
The structure of Structure of Trek-1CG*:ML335, PDB code: 8ue2
was solved by
A.Mondal,
H.Lee,
D.L.Minor,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
24.53 /
3.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
66.929,
119.655,
128.652,
90,
90,
90
|
R / Rfree (%)
|
26.6 /
29.2
|
Other elements in 8ue2:
The structure of Structure of Trek-1CG*:ML335 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of Trek-1CG*:ML335
(pdb code 8ue2). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of Trek-1CG*:ML335, PDB code: 8ue2:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 8ue2
Go back to
Chlorine Binding Sites List in 8ue2
Chlorine binding site 1 out
of 4 in the Structure of Trek-1CG*:ML335
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of Trek-1CG*:ML335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl410
b:137.8
occ:1.00
|
CL1
|
A:Q6F410
|
0.0
|
137.8
|
1.0
|
C18
|
A:Q6F410
|
1.8
|
121.2
|
1.0
|
C21
|
A:Q6F410
|
2.7
|
114.2
|
1.0
|
C12
|
A:Q6F410
|
2.7
|
112.5
|
1.0
|
C09
|
A:Q6F410
|
3.1
|
99.8
|
1.0
|
N07
|
A:Q6F410
|
3.1
|
91.5
|
1.0
|
O
|
A:ALA259
|
3.2
|
119.6
|
1.0
|
N
|
A:ALA259
|
4.0
|
99.4
|
1.0
|
CB
|
A:ALA259
|
4.0
|
102.1
|
1.0
|
CE1
|
A:PHE134
|
4.0
|
103.1
|
1.0
|
C19
|
A:Q6F410
|
4.0
|
100.5
|
1.0
|
C23
|
A:Q6F410
|
4.0
|
114.2
|
1.0
|
CG1
|
A:VAL258
|
4.1
|
102.5
|
1.0
|
C
|
A:ALA259
|
4.1
|
117.0
|
1.0
|
CA
|
A:ALA259
|
4.2
|
110.2
|
1.0
|
C13
|
A:Q6F410
|
4.2
|
104.1
|
1.0
|
CE2
|
A:PHE145
|
4.2
|
79.8
|
1.0
|
CD1
|
A:PHE134
|
4.3
|
94.8
|
1.0
|
CG1
|
A:VAL274
|
4.4
|
93.4
|
1.0
|
C22
|
A:Q6F410
|
4.5
|
101.7
|
1.0
|
C15
|
A:Q6F410
|
4.6
|
106.6
|
1.0
|
CZ
|
A:PHE244
|
4.6
|
88.5
|
1.0
|
CZ
|
A:PHE145
|
4.8
|
71.1
|
1.0
|
C
|
A:VAL258
|
4.9
|
108.1
|
1.0
|
CD1
|
A:ILE278
|
4.9
|
90.0
|
1.0
|
C10
|
A:Q6F410
|
4.9
|
108.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 8ue2
Go back to
Chlorine Binding Sites List in 8ue2
Chlorine binding site 2 out
of 4 in the Structure of Trek-1CG*:ML335
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of Trek-1CG*:ML335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl410
b:99.1
occ:1.00
|
CL2
|
A:Q6F410
|
0.0
|
99.1
|
1.0
|
C23
|
A:Q6F410
|
1.8
|
114.2
|
1.0
|
C22
|
A:Q6F410
|
2.7
|
101.7
|
1.0
|
C21
|
A:Q6F410
|
2.7
|
114.2
|
1.0
|
C
|
A:GLY137
|
3.7
|
88.6
|
1.0
|
CD1
|
A:ILE278
|
3.7
|
90.0
|
1.0
|
O
|
A:GLY137
|
3.8
|
75.9
|
1.0
|
N
|
A:THR138
|
3.8
|
91.7
|
1.0
|
OG1
|
A:THR141
|
4.0
|
65.1
|
1.0
|
C19
|
A:Q6F410
|
4.0
|
100.5
|
1.0
|
C18
|
A:Q6F410
|
4.0
|
121.2
|
1.0
|
CD1
|
A:ILE143
|
4.1
|
69.2
|
1.0
|
CA
|
A:GLY137
|
4.1
|
98.3
|
1.0
|
CA
|
A:THR138
|
4.2
|
89.7
|
1.0
|
CG2
|
A:THR138
|
4.3
|
108.8
|
1.0
|
CH2
|
A:TRP275
|
4.5
|
116.0
|
1.0
|
CZ3
|
A:TRP275
|
4.5
|
101.4
|
1.0
|
CG2
|
A:THR141
|
4.5
|
76.7
|
1.0
|
CG2
|
A:ILE278
|
4.5
|
91.8
|
1.0
|
C12
|
A:Q6F410
|
4.6
|
112.5
|
1.0
|
O
|
A:PHE134
|
4.7
|
92.0
|
1.0
|
CB
|
A:THR141
|
4.8
|
76.0
|
1.0
|
CB
|
A:THR138
|
4.9
|
93.4
|
1.0
|
CZ2
|
A:TRP275
|
4.9
|
115.0
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 8ue2
Go back to
Chlorine Binding Sites List in 8ue2
Chlorine binding site 3 out
of 4 in the Structure of Trek-1CG*:ML335
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of Trek-1CG*:ML335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl413
b:87.9
occ:1.00
|
CL1
|
B:Q6F413
|
0.0
|
87.9
|
1.0
|
C18
|
B:Q6F413
|
1.8
|
99.2
|
1.0
|
C21
|
B:Q6F413
|
2.7
|
83.7
|
1.0
|
C12
|
B:Q6F413
|
2.7
|
89.7
|
1.0
|
C09
|
B:Q6F413
|
3.0
|
91.2
|
1.0
|
N07
|
B:Q6F413
|
3.1
|
91.0
|
1.0
|
O
|
B:ALA259
|
3.4
|
84.8
|
1.0
|
CE1
|
B:PHE134
|
3.7
|
92.3
|
1.0
|
C19
|
B:Q6F413
|
4.0
|
76.0
|
1.0
|
C23
|
B:Q6F413
|
4.0
|
89.3
|
1.0
|
CE2
|
B:PHE145
|
4.0
|
75.7
|
1.0
|
N
|
B:ALA259
|
4.1
|
87.8
|
1.0
|
CB
|
B:ALA259
|
4.1
|
84.2
|
1.0
|
CD1
|
B:ILE278
|
4.2
|
82.3
|
1.0
|
C13
|
B:Q6F413
|
4.2
|
103.0
|
1.0
|
CG1
|
B:VAL258
|
4.3
|
85.9
|
1.0
|
C
|
B:ALA259
|
4.3
|
80.0
|
1.0
|
CD1
|
B:PHE134
|
4.3
|
81.5
|
1.0
|
CA
|
B:ALA259
|
4.4
|
87.7
|
1.0
|
CG1
|
B:VAL274
|
4.4
|
87.4
|
1.0
|
CZ
|
B:PHE244
|
4.4
|
71.9
|
1.0
|
C22
|
B:Q6F413
|
4.5
|
81.6
|
1.0
|
CZ
|
B:PHE145
|
4.6
|
75.2
|
1.0
|
C15
|
B:Q6F413
|
4.7
|
107.0
|
1.0
|
CZ
|
B:PHE134
|
4.7
|
87.9
|
1.0
|
CD2
|
B:PHE145
|
4.9
|
85.3
|
1.0
|
C10
|
B:Q6F413
|
4.9
|
107.8
|
1.0
|
C
|
B:VAL258
|
5.0
|
82.8
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 8ue2
Go back to
Chlorine Binding Sites List in 8ue2
Chlorine binding site 4 out
of 4 in the Structure of Trek-1CG*:ML335
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of Trek-1CG*:ML335 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl413
b:82.5
occ:1.00
|
CL2
|
B:Q6F413
|
0.0
|
82.5
|
1.0
|
C23
|
B:Q6F413
|
1.8
|
89.3
|
1.0
|
C22
|
B:Q6F413
|
2.7
|
81.6
|
1.0
|
C21
|
B:Q6F413
|
2.7
|
83.7
|
1.0
|
C
|
B:GLY137
|
3.3
|
74.6
|
1.0
|
N
|
B:THR138
|
3.4
|
81.0
|
1.0
|
O
|
B:GLY137
|
3.5
|
68.5
|
1.0
|
CA
|
B:GLY137
|
3.8
|
66.4
|
1.0
|
CA
|
B:THR138
|
3.8
|
68.7
|
1.0
|
CG2
|
B:THR138
|
4.0
|
66.3
|
1.0
|
OG1
|
B:THR141
|
4.0
|
68.2
|
1.0
|
C19
|
B:Q6F413
|
4.0
|
76.0
|
1.0
|
C18
|
B:Q6F413
|
4.0
|
99.2
|
1.0
|
CD1
|
B:ILE278
|
4.3
|
82.3
|
1.0
|
CZ3
|
B:TRP275
|
4.3
|
90.6
|
1.0
|
CH2
|
B:TRP275
|
4.4
|
82.6
|
1.0
|
O
|
B:PHE134
|
4.4
|
73.3
|
1.0
|
CG2
|
B:THR141
|
4.5
|
63.7
|
1.0
|
CD1
|
B:ILE143
|
4.5
|
71.2
|
1.0
|
CB
|
B:THR138
|
4.6
|
70.6
|
1.0
|
C12
|
B:Q6F413
|
4.6
|
89.7
|
1.0
|
CG2
|
B:ILE278
|
4.7
|
71.4
|
1.0
|
CE3
|
B:TRP275
|
4.9
|
93.7
|
1.0
|
CB
|
B:THR141
|
4.9
|
65.3
|
1.0
|
CD1
|
B:PHE134
|
5.0
|
81.5
|
1.0
|
CZ2
|
B:TRP275
|
5.0
|
84.1
|
1.0
|
|
Reference:
A.Mondal,
H.Lee,
D.L.Minor.
Structure of Trek-1CG*:ML335 To Be Published.
Page generated: Tue Jul 30 13:12:50 2024
|