Chlorine in PDB 8un3: Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Enzymatic activity of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
All present enzymatic activity of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One):
3.6.5.2;
Protein crystallography data
The structure of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One), PDB code: 8un3
was solved by
M.H.Ultsch,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.69 /
2.07
|
Space group
|
P 32
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.217,
69.217,
166.92,
90,
90,
120
|
R / Rfree (%)
|
16.2 /
19.1
|
Other elements in 8un3:
The structure of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
(pdb code 8un3). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the
Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One), PDB code: 8un3:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Chlorine binding site 1 out
of 8 in 8un3
Go back to
Chlorine Binding Sites List in 8un3
Chlorine binding site 1 out
of 8 in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:35.3
occ:1.00
|
CL
|
A:XOI201
|
0.0
|
35.3
|
1.0
|
C12
|
A:XOI201
|
1.7
|
27.7
|
1.0
|
C11
|
A:XOI201
|
2.7
|
30.3
|
1.0
|
C7
|
A:XOI201
|
2.7
|
27.5
|
1.0
|
O
|
A:XOI201
|
2.8
|
29.1
|
1.0
|
C4
|
A:XOI201
|
3.0
|
29.2
|
1.0
|
NH2
|
A:ARG68
|
3.3
|
35.3
|
1.0
|
CL
|
A:CL205
|
3.5
|
44.8
|
1.0
|
CE
|
A:MET72
|
3.5
|
29.3
|
1.0
|
N
|
A:XOI201
|
3.5
|
31.3
|
1.0
|
F
|
A:XOI201
|
3.5
|
30.1
|
1.0
|
C5
|
A:XOI201
|
3.7
|
27.7
|
1.0
|
C8
|
A:XOI201
|
4.0
|
24.8
|
1.0
|
NE
|
A:ARG68
|
4.0
|
35.9
|
1.0
|
C10
|
A:XOI201
|
4.0
|
29.1
|
1.0
|
CZ
|
A:ARG68
|
4.0
|
35.5
|
1.0
|
C13
|
A:XOI201
|
4.0
|
26.3
|
1.0
|
C6
|
A:XOI201
|
4.1
|
31.9
|
1.0
|
SD
|
A:MET72
|
4.2
|
33.8
|
1.0
|
CB
|
A:THR58
|
4.3
|
36.0
|
1.0
|
H8
|
A:XOI201
|
4.3
|
31.2
|
1.0
|
H9
|
A:XOI201
|
4.3
|
31.2
|
1.0
|
CG2
|
A:THR58
|
4.3
|
33.9
|
1.0
|
CG
|
A:MET72
|
4.4
|
30.4
|
1.0
|
C3
|
A:XOI201
|
4.5
|
30.0
|
1.0
|
C9
|
A:XOI201
|
4.5
|
23.3
|
1.0
|
F2
|
A:XOI201
|
4.6
|
29.4
|
1.0
|
C1
|
A:XOI201
|
4.7
|
24.9
|
1.0
|
OG1
|
A:THR58
|
4.8
|
30.6
|
1.0
|
H7
|
A:XOI201
|
4.8
|
29.4
|
1.0
|
|
Chlorine binding site 2 out
of 8 in 8un3
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Chlorine Binding Sites List in 8un3
Chlorine binding site 2 out
of 8 in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:34.4
occ:1.00
|
O
|
A:HOH351
|
3.2
|
42.7
|
1.0
|
NE
|
A:ARG102
|
4.0
|
25.9
|
1.0
|
O
|
A:HOH386
|
4.2
|
36.3
|
1.0
|
NE
|
D:ARG102
|
4.2
|
27.4
|
1.0
|
CZ
|
A:ARG102
|
4.3
|
29.0
|
1.0
|
CZ
|
D:ARG102
|
4.3
|
30.1
|
1.0
|
CD
|
A:ARG102
|
4.3
|
25.5
|
1.0
|
OE1
|
A:GLN99
|
4.3
|
27.4
|
1.0
|
O
|
D:HOH366
|
4.4
|
32.3
|
1.0
|
CG
|
D:TYR64
|
4.5
|
29.1
|
1.0
|
CB
|
D:TYR64
|
4.5
|
29.8
|
1.0
|
NH2
|
D:ARG102
|
4.6
|
29.2
|
1.0
|
NE2
|
A:GLN99
|
4.6
|
31.6
|
1.0
|
NH2
|
A:ARG102
|
4.6
|
29.9
|
1.0
|
CD
|
D:ARG102
|
4.6
|
28.4
|
1.0
|
OE1
|
D:GLN99
|
4.6
|
32.5
|
1.0
|
NH1
|
D:ARG102
|
4.6
|
30.9
|
1.0
|
CD2
|
D:TYR64
|
4.7
|
32.1
|
1.0
|
CG
|
A:TYR64
|
4.7
|
31.0
|
1.0
|
NH1
|
A:ARG102
|
4.8
|
29.1
|
1.0
|
CB
|
A:TYR64
|
4.8
|
29.2
|
1.0
|
CD
|
A:GLN99
|
4.9
|
23.2
|
1.0
|
CD2
|
A:TYR64
|
4.9
|
29.9
|
1.0
|
CD1
|
D:TYR64
|
4.9
|
31.0
|
1.0
|
|
Chlorine binding site 3 out
of 8 in 8un3
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Chlorine Binding Sites List in 8un3
Chlorine binding site 3 out
of 8 in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:44.8
occ:1.00
|
O
|
A:GLU63
|
3.0
|
30.0
|
1.0
|
N
|
A:XOI201
|
3.0
|
31.3
|
1.0
|
NE
|
A:ARG68
|
3.1
|
35.9
|
1.0
|
N
|
A:GLU63
|
3.2
|
30.1
|
1.0
|
H29
|
A:XOI201
|
3.3
|
36.0
|
1.0
|
C12
|
A:XOI201
|
3.4
|
27.7
|
1.0
|
CL
|
A:XOI201
|
3.5
|
35.3
|
1.0
|
C7
|
A:XOI201
|
3.5
|
27.5
|
1.0
|
O
|
A:GLN61
|
3.6
|
42.2
|
1.0
|
CG
|
A:ARG68
|
3.7
|
36.7
|
1.0
|
C4
|
A:XOI201
|
3.7
|
29.2
|
1.0
|
NH2
|
A:ARG68
|
3.7
|
35.3
|
1.0
|
CZ
|
A:ARG68
|
3.8
|
35.5
|
1.0
|
C
|
A:GLU63
|
3.9
|
29.7
|
1.0
|
C3
|
A:XOI201
|
3.9
|
30.0
|
1.0
|
N6
|
A:XOI201
|
3.9
|
30.4
|
1.0
|
CD
|
A:ARG68
|
3.9
|
34.6
|
1.0
|
CA
|
A:GLU62
|
4.0
|
29.1
|
1.0
|
C11
|
A:XOI201
|
4.0
|
30.3
|
1.0
|
CA
|
A:GLU63
|
4.0
|
30.1
|
1.0
|
C
|
A:GLU62
|
4.1
|
33.3
|
1.0
|
C8
|
A:XOI201
|
4.3
|
24.8
|
1.0
|
CB
|
A:GLU63
|
4.5
|
37.1
|
1.0
|
O
|
A:XOI201
|
4.5
|
29.1
|
1.0
|
C
|
A:GLN61
|
4.5
|
38.8
|
1.0
|
C10
|
A:XOI201
|
4.7
|
29.1
|
1.0
|
N
|
A:GLU62
|
4.7
|
37.4
|
1.0
|
C9
|
A:XOI201
|
4.8
|
23.3
|
1.0
|
H28
|
A:XOI201
|
4.8
|
36.0
|
1.0
|
H7
|
A:XOI201
|
4.9
|
29.4
|
1.0
|
|
Chlorine binding site 4 out
of 8 in 8un3
Go back to
Chlorine Binding Sites List in 8un3
Chlorine binding site 4 out
of 8 in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl206
b:41.7
occ:1.00
|
O
|
A:HOH323
|
2.4
|
47.2
|
1.0
|
NZ
|
A:LYS42
|
3.1
|
41.7
|
1.0
|
CE
|
A:LYS42
|
3.4
|
40.1
|
1.0
|
ND2
|
A:ASN26
|
3.9
|
42.2
|
1.0
|
CD
|
A:LYS42
|
4.9
|
42.5
|
1.0
|
|
Chlorine binding site 5 out
of 8 in 8un3
Go back to
Chlorine Binding Sites List in 8un3
Chlorine binding site 5 out
of 8 in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl201
b:38.4
occ:1.00
|
CL
|
B:XOI201
|
0.0
|
38.4
|
1.0
|
C12
|
B:XOI201
|
1.7
|
29.7
|
1.0
|
C11
|
B:XOI201
|
2.7
|
33.2
|
1.0
|
C7
|
B:XOI201
|
2.7
|
27.4
|
1.0
|
O
|
B:XOI201
|
2.8
|
36.3
|
1.0
|
C4
|
B:XOI201
|
3.0
|
29.1
|
1.0
|
O
|
B:HOH325
|
3.2
|
34.8
|
1.0
|
NH2
|
B:ARG68
|
3.4
|
32.6
|
1.0
|
N
|
B:XOI201
|
3.5
|
28.1
|
1.0
|
CE
|
B:MET72
|
3.5
|
37.8
|
1.0
|
F
|
B:XOI201
|
3.7
|
27.9
|
1.0
|
C5
|
B:XOI201
|
3.8
|
26.0
|
1.0
|
NE
|
B:ARG68
|
3.9
|
31.8
|
1.0
|
SD
|
B:MET72
|
3.9
|
42.1
|
1.0
|
C8
|
B:XOI201
|
4.0
|
30.5
|
1.0
|
CZ
|
B:ARG68
|
4.0
|
34.7
|
1.0
|
C10
|
B:XOI201
|
4.0
|
30.1
|
1.0
|
C13
|
B:XOI201
|
4.1
|
36.9
|
1.0
|
C6
|
B:XOI201
|
4.2
|
31.5
|
1.0
|
CG2
|
B:THR58
|
4.3
|
29.0
|
1.0
|
CG
|
B:MET72
|
4.3
|
30.4
|
1.0
|
H8
|
B:XOI201
|
4.3
|
43.9
|
1.0
|
CB
|
B:THR58
|
4.4
|
30.0
|
1.0
|
C3
|
B:XOI201
|
4.4
|
26.0
|
1.0
|
H9
|
B:XOI201
|
4.4
|
43.9
|
1.0
|
C9
|
B:XOI201
|
4.5
|
27.2
|
1.0
|
F2
|
B:XOI201
|
4.6
|
33.6
|
1.0
|
C1
|
B:XOI201
|
4.7
|
26.6
|
1.0
|
H7
|
B:XOI201
|
4.8
|
36.2
|
1.0
|
C2
|
B:XOI201
|
5.0
|
32.6
|
1.0
|
|
Chlorine binding site 6 out
of 8 in 8un3
Go back to
Chlorine Binding Sites List in 8un3
Chlorine binding site 6 out
of 8 in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl201
b:31.6
occ:1.00
|
CL
|
C:XOI201
|
0.0
|
31.6
|
1.0
|
C12
|
C:XOI201
|
1.7
|
29.8
|
1.0
|
C11
|
C:XOI201
|
2.7
|
32.0
|
1.0
|
C7
|
C:XOI201
|
2.7
|
28.8
|
1.0
|
O
|
C:XOI201
|
2.8
|
32.2
|
1.0
|
C4
|
C:XOI201
|
3.0
|
28.1
|
1.0
|
NH2
|
C:ARG68
|
3.4
|
32.1
|
1.0
|
F
|
C:XOI201
|
3.5
|
30.5
|
1.0
|
N
|
C:XOI201
|
3.5
|
31.2
|
1.0
|
O
|
C:HOH344
|
3.5
|
30.3
|
1.0
|
CE
|
C:MET72
|
3.6
|
28.9
|
1.0
|
C5
|
C:XOI201
|
3.8
|
25.4
|
1.0
|
C8
|
C:XOI201
|
4.0
|
24.5
|
1.0
|
C10
|
C:XOI201
|
4.0
|
30.3
|
1.0
|
C13
|
C:XOI201
|
4.0
|
29.4
|
1.0
|
NE
|
C:ARG68
|
4.0
|
35.5
|
1.0
|
SD
|
C:MET72
|
4.1
|
34.0
|
1.0
|
O
|
C:HOH337
|
4.1
|
39.9
|
1.0
|
CZ
|
C:ARG68
|
4.1
|
27.1
|
1.0
|
C6
|
C:XOI201
|
4.1
|
30.1
|
1.0
|
H8
|
C:XOI201
|
4.2
|
34.9
|
1.0
|
H9
|
C:XOI201
|
4.3
|
34.9
|
1.0
|
CB
|
C:THR58
|
4.3
|
30.9
|
1.0
|
C3
|
C:XOI201
|
4.5
|
29.5
|
1.0
|
CG2
|
C:THR58
|
4.5
|
32.6
|
1.0
|
C9
|
C:XOI201
|
4.5
|
23.1
|
1.0
|
CG
|
C:MET72
|
4.5
|
32.0
|
1.0
|
F2
|
C:XOI201
|
4.7
|
28.6
|
1.0
|
C1
|
C:XOI201
|
4.7
|
21.6
|
1.0
|
H7
|
C:XOI201
|
4.8
|
29.0
|
1.0
|
OG1
|
C:THR58
|
4.8
|
31.2
|
1.0
|
C2
|
C:XOI201
|
5.0
|
24.9
|
1.0
|
|
Chlorine binding site 7 out
of 8 in 8un3
Go back to
Chlorine Binding Sites List in 8un3
Chlorine binding site 7 out
of 8 in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl203
b:39.7
occ:1.00
|
O
|
C:HOH379
|
2.3
|
34.0
|
1.0
|
O
|
B:HOH394
|
2.3
|
35.0
|
1.0
|
NE
|
B:ARG102
|
4.1
|
24.8
|
1.0
|
NE
|
C:ARG102
|
4.1
|
26.8
|
1.0
|
CZ
|
B:ARG102
|
4.1
|
28.9
|
1.0
|
CZ
|
C:ARG102
|
4.2
|
29.4
|
1.0
|
OE1
|
C:GLN99
|
4.2
|
29.4
|
1.0
|
CG
|
C:TYR64
|
4.3
|
30.5
|
1.0
|
O
|
C:HOH363
|
4.3
|
35.0
|
1.0
|
NH2
|
C:ARG102
|
4.3
|
26.3
|
1.0
|
CB
|
C:TYR64
|
4.3
|
26.5
|
1.0
|
CD
|
B:ARG102
|
4.4
|
25.7
|
1.0
|
NH1
|
B:ARG102
|
4.4
|
32.1
|
1.0
|
O
|
C:HOH386
|
4.4
|
39.7
|
1.0
|
NH2
|
B:ARG102
|
4.5
|
32.8
|
1.0
|
O
|
B:HOH397
|
4.5
|
33.5
|
1.0
|
CD2
|
C:TYR64
|
4.5
|
30.0
|
1.0
|
OE1
|
B:GLN99
|
4.5
|
35.5
|
1.0
|
CD
|
C:ARG102
|
4.6
|
27.6
|
1.0
|
CD1
|
C:TYR64
|
4.6
|
25.4
|
1.0
|
NH1
|
C:ARG102
|
4.7
|
30.3
|
1.0
|
NE2
|
C:GLN99
|
4.8
|
26.9
|
1.0
|
CG
|
B:TYR64
|
4.8
|
28.5
|
1.0
|
CB
|
B:TYR64
|
4.9
|
29.0
|
1.0
|
CD
|
C:GLN99
|
4.9
|
24.6
|
1.0
|
NE2
|
B:GLN99
|
4.9
|
38.2
|
1.0
|
CD2
|
B:TYR64
|
4.9
|
30.1
|
1.0
|
|
Chlorine binding site 8 out
of 8 in 8un3
Go back to
Chlorine Binding Sites List in 8un3
Chlorine binding site 8 out
of 8 in the Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Kras-G13D-Gdp in Complex with CPD5 (1-((S)-10-(6-Amino-4-Methyl-3- (Trifluoromethyl)Pyridin-2-Yl)-11-Chloro-7-(((2S,4R)-4-Fluoro-1- Methylpyrrolidin-2-Yl)Methoxy)-3,4,13,13A-Tetrahydropyrazino[2',1':3, 4][1,4]Oxazepino[5,6,7-De]Quinazolin-2(1H)-Yl)Prop-2-En-1-One) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl201
b:36.5
occ:1.00
|
CL
|
D:XOI201
|
0.0
|
36.5
|
1.0
|
C12
|
D:XOI201
|
1.7
|
32.5
|
1.0
|
C11
|
D:XOI201
|
2.7
|
33.0
|
1.0
|
C7
|
D:XOI201
|
2.7
|
28.8
|
1.0
|
O
|
D:XOI201
|
2.8
|
35.9
|
1.0
|
C4
|
D:XOI201
|
3.0
|
28.4
|
1.0
|
O
|
D:HOH315
|
3.1
|
35.1
|
1.0
|
NH2
|
D:ARG68
|
3.3
|
34.3
|
1.0
|
N
|
D:XOI201
|
3.4
|
29.8
|
1.0
|
F
|
D:XOI201
|
3.7
|
29.3
|
1.0
|
C5
|
D:XOI201
|
3.8
|
27.6
|
1.0
|
SD
|
D:MET72
|
3.9
|
40.3
|
1.0
|
NE
|
D:ARG68
|
3.9
|
37.6
|
1.0
|
CZ
|
D:ARG68
|
3.9
|
34.9
|
1.0
|
C8
|
D:XOI201
|
4.0
|
28.6
|
1.0
|
CE
|
D:MET72
|
4.0
|
32.0
|
1.0
|
C10
|
D:XOI201
|
4.0
|
29.5
|
1.0
|
C13
|
D:XOI201
|
4.1
|
36.9
|
1.0
|
C6
|
D:XOI201
|
4.2
|
30.2
|
1.0
|
H8
|
D:XOI201
|
4.3
|
43.9
|
1.0
|
CB
|
D:THR58
|
4.3
|
34.0
|
1.0
|
H9
|
D:XOI201
|
4.4
|
43.9
|
1.0
|
CG2
|
D:THR58
|
4.4
|
29.1
|
1.0
|
CG
|
D:MET72
|
4.4
|
31.4
|
1.0
|
C3
|
D:XOI201
|
4.4
|
28.3
|
1.0
|
C9
|
D:XOI201
|
4.5
|
28.5
|
1.0
|
F2
|
D:XOI201
|
4.7
|
31.2
|
1.0
|
C1
|
D:XOI201
|
4.8
|
27.5
|
1.0
|
H7
|
D:XOI201
|
4.8
|
34.0
|
1.0
|
OG1
|
D:THR58
|
5.0
|
30.9
|
1.0
|
|
Reference:
C.Nilewski,
M.H.Ultsch.
N/A N/A.
Page generated: Tue Jul 30 13:15:50 2024
|