Chlorine in PDB 8uq9: Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker

Enzymatic activity of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker

All present enzymatic activity of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker:
2.3.2.23; 2.3.2.24; 2.3.2.27;

Protein crystallography data

The structure of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker, PDB code: 8uq9 was solved by Q.Hu, M.V.Botuyan, G.Mer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.18 / 2.30
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 108.135, 108.135, 114.01, 90, 90, 120
R / Rfree (%) 18.3 / 20.6

Other elements in 8uq9:

The structure of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker also contains other interesting chemical elements:

Sodium (Na) 4 atoms
Zinc (Zn) 4 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker (pdb code 8uq9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 36 binding sites of Chlorine where determined in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker, PDB code: 8uq9:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 36 in 8uq9

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Chlorine binding site 1 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4001

b:32.2
occ:1.00
 O A:HOH5071 3.0 31.7 1.0
N A:ARG86 3.3 36.1 1.0
CA A:TYR84 3.4 27.8 1.0
C A:TYR84 3.4 26.9 1.0
N A:GLU87 3.4 38.0 1.0
CB A:ARG86 3.6 44.4 1.0
N A:PRO85 3.7 34.4 1.0
O A:TYR84 3.8 31.2 1.0
CA A:ARG86 3.8 41.1 1.0
CG A:GLU87 3.8 43.5 1.0
CB A:TYR84 3.9 31.2 1.0
CD A:PRO85 3.9 34.5 1.0
C A:ARG86 4.1 38.3 1.0
CB A:GLU87 4.2 35.8 1.0
C A:PRO85 4.3 36.9 1.0
CD1 A:TYR84 4.4 30.1 1.0
CA A:GLU87 4.4 37.7 1.0
CA A:PRO85 4.6 32.2 1.0
O A:HIS83 4.6 33.0 1.0
N A:TYR84 4.6 27.1 1.0
CG A:TYR84 4.7 30.7 1.0
CG A:PRO85 4.7 34.8 1.0
CG A:ARG86 4.9 47.0 1.0
CD A:GLU87 5.0 51.6 1.0

Chlorine binding site 2 out of 36 in 8uq9

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Chlorine binding site 2 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4002

b:40.7
occ:1.00
 N A:LEU3 3.1 47.4 1.0
NE2 A:HIS83 3.1 32.2 1.0
NZ A:LYS82 3.3 47.6 1.0
CD1 A:ILE79 3.7 48.7 1.0
CA A:ALA2 3.8 57.8 1.0
CB A:LEU3 3.9 36.5 1.0
CE1 A:HIS83 3.9 40.3 1.0
C A:ALA2 3.9 55.8 1.0
CA A:LEU3 4.0 41.1 1.0
O A:LEU3 4.0 36.4 1.0
CE A:LYS82 4.0 44.9 1.0
CD A:LYS82 4.2 41.5 1.0
CD2 A:HIS83 4.2 31.2 1.0
CB A:ALA2 4.2 45.9 1.0
CG A:LEU3 4.2 43.4 1.0
CG1 A:ILE8 4.4 35.7 1.0
C A:LEU3 4.4 36.9 1.0
CD1 A:ILE8 4.7 34.1 1.0
CD1 A:LEU3 4.7 41.5 1.0
O A:MET1 4.8 67.7 1.0

Chlorine binding site 3 out of 36 in 8uq9

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Chlorine binding site 3 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4003

b:54.1
occ:1.00
 NZ A:LYS37 3.2 57.4 1.0
C A:ASN69 3.5 36.2 1.0
CA A:ASN69 3.5 40.4 1.0
N A:LEU71 3.6 29.0 1.0
O A:ASN69 3.7 37.2 1.0
O a:HOH5166 3.8 47.6 1.0
CE A:LYS37 3.8 50.2 1.0
CB A:LEU71 3.8 31.6 1.0
N A:SER70 3.9 34.0 1.0
CD1 A:LEU71 3.9 36.3 1.0
CG A:LEU71 4.1 34.6 1.0
CB A:ASN69 4.1 49.8 1.0
ND2 A:ASN69 4.2 58.2 1.0
CA A:LEU71 4.3 29.3 1.0
CG2 A:VAL72 4.5 25.9 1.0
N A:VAL72 4.6 29.2 1.0
C A:SER70 4.6 27.9 1.0
CA A:SER70 4.6 27.8 1.0
O A:HOH5219 4.7 54.1 1.0
CG A:ASN69 4.7 54.3 1.0
N A:ASN69 4.8 41.7 1.0
O A:HIS65 4.8 31.2 1.0
C A:LEU71 4.9 29.3 1.0

Chlorine binding site 4 out of 36 in 8uq9

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Chlorine binding site 4 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4004

b:66.3
occ:1.00
 O A:HOH5186 2.7 45.5 1.0
NE1 A:TRP77 3.1 29.9 1.0
OE2 A:GLU25 4.0 52.0 1.0
OE2 a:GLU1140 4.0 50.9 1.0
CE2 A:TRP77 4.1 31.8 1.0
CD1 A:TRP77 4.1 30.7 1.0
CD a:GLU1140 4.2 57.2 1.0
CZ2 A:TRP77 4.3 35.1 1.0
NE2 A:GLN81 4.3 42.4 1.0
CG A:GLU25 4.4 37.2 1.0
O A:HOH5218 4.4 45.4 1.0
OE1 a:GLU1140 4.5 54.4 1.0
CD A:GLU25 4.5 40.6 1.0
OE1 A:GLN81 4.8 36.1 1.0
CD A:GLN81 4.9 37.1 1.0
CG a:GLU1140 4.9 50.3 1.0

Chlorine binding site 5 out of 36 in 8uq9

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Chlorine binding site 5 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4005

b:54.7
occ:1.00
 O A:HOH5076 2.9 27.5 1.0
O A:HOH5204 3.0 46.3 1.0
N A:SER60 3.1 26.6 1.0
OG A:SER59 3.2 34.3 1.0
CB A:SER60 3.5 32.5 1.0
N A:SER59 3.5 33.2 1.0
OG A:SER60 3.7 39.9 1.0
O A:HOH5075 3.7 26.4 1.0
CA A:SER60 3.9 32.5 1.0
O A:ARG57 4.1 26.9 1.0
C A:SER59 4.1 29.1 1.0
CA A:SER59 4.1 31.2 1.0
C A:VAL58 4.2 32.6 1.0
C A:ARG57 4.2 30.6 1.0
N A:VAL58 4.2 30.1 1.0
CB A:SER59 4.2 32.5 1.0
CA A:VAL58 4.3 27.9 1.0
CB A:ARG57 4.3 41.1 1.0
N A:TRP61 4.7 32.3 1.0
NE A:ARG57 4.8 39.6 1.0
O A:HOH5206 4.9 46.8 1.0
C A:SER60 4.9 29.4 1.0
CA A:ARG57 4.9 33.8 1.0

Chlorine binding site 6 out of 36 in 8uq9

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Chlorine binding site 6 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4006

b:49.4
occ:1.00
 N A:LYS5 3.2 38.3 1.0
O A:HOH5080 3.2 40.0 1.0
CB A:LYS5 3.8 46.9 1.0
CA A:PRO4 3.9 35.0 1.0
CG A:LYS5 4.0 50.3 1.0
C A:PRO4 4.1 37.1 1.0
CA A:LYS5 4.2 38.2 1.0
CD A:LYS5 4.2 59.4 1.0
CB A:PRO4 4.4 33.6 1.0

Chlorine binding site 7 out of 36 in 8uq9

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Chlorine binding site 7 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4012

b:59.7
occ:1.00
 N A:GLU1122 3.1 34.8 1.0
CB A:GLU1122 3.3 39.6 1.0
CD A:PRO1121 3.6 38.4 1.0
N A:PRO1121 3.6 36.2 1.0
CA A:GLU1122 3.8 37.3 1.0
CG1 A:VAL1120 3.9 36.9 1.0
C A:VAL1120 4.0 39.0 1.0
C A:PRO1121 4.0 34.9 1.0
CA A:PRO1121 4.2 37.2 1.0
CB A:PRO1121 4.2 35.6 1.0
CG A:PRO1121 4.3 36.6 1.0
CA A:VAL1120 4.3 37.3 1.0
O A:VAL1120 4.7 36.3 1.0
CG A:GLU1122 4.7 55.0 1.0
CB A:VAL1120 4.8 37.1 1.0
C A:GLU1122 5.0 35.8 1.0

Chlorine binding site 8 out of 36 in 8uq9

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Chlorine binding site 8 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4013

b:63.5
occ:1.00
 O A:HOH5187 2.6 48.0 1.0
NH1 A:ARG1139 3.4 49.8 1.0
CD A:ARG1139 3.5 56.8 1.0
CB A:PRO1044 3.7 39.7 1.0
O A:HOH5115 3.8 46.3 1.0
CA A:PRO1044 3.8 35.5 1.0
CB A:ASN1135 3.9 46.4 1.0
CG A:ASN1135 4.0 48.1 1.0
N A:PRO1044 4.3 39.1 1.0
OD1 A:ASN1135 4.4 44.4 1.0
CZ A:ARG1139 4.4 55.3 1.0
NE A:ARG1139 4.4 54.6 1.0
ND2 A:ASN1135 4.5 44.0 1.0
CG A:ARG1139 4.5 52.9 1.0
O A:HOH5212 4.7 52.0 1.0
CG A:PRO1044 4.7 41.0 1.0
CD A:PRO1044 4.7 41.3 1.0
C A:SER1043 4.8 43.2 1.0
CA A:ASN1135 4.8 41.1 1.0
O A:SER1043 4.8 41.9 1.0
O A:ASN1135 4.8 40.8 1.0
C A:ASN1135 5.0 38.7 1.0

Chlorine binding site 9 out of 36 in 8uq9

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Chlorine binding site 9 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4014

b:62.3
occ:1.00
 N A:SER1080 3.1 35.9 1.0
CB A:ASN1079 3.6 33.0 1.0
OG A:SER1080 3.6 39.9 1.0
CB A:SER1080 3.6 41.0 1.0
CA A:ASN1079 3.7 37.9 1.0
C A:ASN1079 3.9 37.1 1.0
CA A:SER1080 3.9 36.7 1.0
CG2 A:VAL1120 4.0 33.2 1.0
O A:HOH5203 4.1 44.1 1.0
CG1 A:VAL1120 4.6 36.9 1.0
CG A:ASN1079 4.7 31.8 1.0
CB A:VAL1120 4.9 37.1 1.0
O A:HOH5149 4.9 44.1 1.0

Chlorine binding site 10 out of 36 in 8uq9

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Chlorine binding site 10 out of 36 in the Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4- Residue Linker within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl4015

b:41.0
occ:1.00
 OG A:SER1083 2.9 32.4 1.0
O A:HOH5058 3.1 31.3 1.0
NZ A:LYS1066 3.4 58.8 1.0
CB A:SER1083 3.6 33.9 1.0
CA A:SER1083 3.8 29.5 1.0
CE A:LYS1066 3.8 60.9 1.0
CB A:ALA1068 4.1 34.7 1.0
N A:SER1083 4.6 31.9 1.0
CG A:LYS1066 4.6 58.0 1.0
O A:VAL1067 4.6 32.6 1.0
NH2 A:ARG1090 4.7 36.1 1.0
CD A:LYS1066 4.7 64.6 1.0
O A:HOH5122 4.9 31.1 1.0
C A:SER1083 4.9 29.4 1.0
N A:ILE1084 4.9 30.0 1.0

Reference:

Q.Hu, M.V.Botuyan, G.Mer. Crystal Structure of RNF168 (Ring)-UBCH5C Fused to H2A-H2B Via A 4-Residue Linker To Be Published.
Page generated: Tue Jul 30 13:17:30 2024

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