Chlorine in PDB 8urf: Crystal Structure of Human ASGR2 Crd (Carbohydrate Recognition Domain) Bound to 8G8 Fab

Protein crystallography data

The structure of Crystal Structure of Human ASGR2 Crd (Carbohydrate Recognition Domain) Bound to 8G8 Fab, PDB code: 8urf was solved by P.Sampathumar, Y.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.54 / 1.90
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 102.41, 102.41, 358.985, 90, 90, 120
R / Rfree (%) 16.6 / 20.4

Other elements in 8urf:

The structure of Crystal Structure of Human ASGR2 Crd (Carbohydrate Recognition Domain) Bound to 8G8 Fab also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human ASGR2 Crd (Carbohydrate Recognition Domain) Bound to 8G8 Fab (pdb code 8urf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human ASGR2 Crd (Carbohydrate Recognition Domain) Bound to 8G8 Fab, PDB code: 8urf:

Chlorine binding site 1 out of 1 in 8urf

Go back to Chlorine Binding Sites List in 8urf
Chlorine binding site 1 out of 1 in the Crystal Structure of Human ASGR2 Crd (Carbohydrate Recognition Domain) Bound to 8G8 Fab


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human ASGR2 Crd (Carbohydrate Recognition Domain) Bound to 8G8 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:55.9
occ:0.33
NE2 A:HIS270 2.3 75.9 1.0
CD2 A:HIS270 3.1 71.4 1.0
CE1 A:HIS270 3.4 78.9 1.0
CG A:HIS270 4.3 70.9 1.0
ND1 A:HIS270 4.4 73.7 1.0

Reference:

P.Sampathkumar, H.Jung, H.Chen, Z.Zhang, N.Suen, Y.Yang, Z.Huang, T.Lopez, R.Benisch, S.J.Lee, J.Ye, W.C.Yeh, Y.Li. Targeted Protein Degradation Systems to Enhance Wnt Signaling. Elife V. 13 2024.
ISSN: ESSN 2050-084X
PubMed: 38847394
DOI: 10.7554/ELIFE.93908
Page generated: Tue Jul 30 13:21:20 2024

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